Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ANOVA
•
reset
2
votes
6
replies
478
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
6 weeks ago
Chris
▴ 10
2
votes
2
replies
576
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
19 months ago
evan.j.williams
▴ 10
3
votes
4
replies
1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
3.1 years ago
Antonio M.
• 0
2
votes
3
replies
1.3k
views
ANOVA Limma
ANOVA
limma
updated 3.2 years ago by
James W. MacDonald
66k • written 3.2 years ago by
georgina.fqw
▴ 10
1
vote
1
reply
756
views
DESeq2 interactions genotype condition code needed
DESeq2
anova
condition
genotypeeval
updated 3.4 years ago by
ATpoint
★ 4.1k • written 3.4 years ago by
Dan
▴ 20
2
votes
4
replies
2.8k
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
3.5 years ago
ecg1g15
▴ 20
5
votes
13
replies
2.7k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2
DEG
ANOVA
Batch effect
Comparison
updated 4.8 years ago by
Michael Love
42k • written 4.8 years ago by
amin.ghareyazi
• 0
3
votes
3
replies
1.9k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.9 years ago by
onlychainsaw2019
• 0 • written 5.4 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
1.6k
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
martyna.broda
• 0
5
votes
6
replies
1.5k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
mikhael.manurung
▴ 270
3
votes
1
reply
1.1k
views
ANOVA-like test via treat() in limma
limma
anova
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
k.vitting.seerup
▴ 120
1
vote
1
reply
869
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma
anova
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
wewolski
▴ 10
1
vote
1
reply
773
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
raya.girish
• 0
1
vote
8
replies
1.5k
views
design versus interaction term similarities and/or differences?
deseq2
ANOVA
design
interaction term
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
tarun2
• 0
0
votes
3
replies
1.4k
views
Anova test on gene expression data
Anova
gene expression
updated 6.5 years ago by
James W. MacDonald
66k • written 6.5 years ago by
sally_b86
• 0
2
votes
6
replies
2.1k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq
limma
voom
anova
updated 2.2 years ago by
tcalvo
▴ 90 • written 6.9 years ago by
David R
▴ 90
2
votes
2
replies
2.1k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR
ANOVA
t-test
contrast
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
Maiv
• 0
0
votes
6
replies
4.5k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.9 years ago by
Gordon Smyth
50k • written 6.9 years ago by
pbachali
▴ 50
2
votes
3
replies
2.1k
views
edgeR ANOVA-like analysis
edger
rnaseq
anova
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
Tony
• 0
1
vote
4
replies
1.5k
views
DESeq2 ANOVADEV giving strange result
deseq2
anova
updated 7.6 years ago by
Michael Love
42k • written 7.6 years ago by
szenitha
▴ 20
3
votes
3
replies
2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma
ANOVA
topTable
microarray
updated 7.6 years ago by
Gordon Smyth
50k • written 7.7 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq
anova
metagenomics
8.0 years ago
David
▴ 860
3
votes
4
replies
1.7k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger
RNA-seq
anova
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
xiaoaozqd
• 0
2
votes
4
replies
1.5k
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
kmyers2
• 0
2
votes
1
reply
3.5k
views
RNA-seq Differential expression using 3 groups
rnaseq
anova
deseq2
edger
genespring
8.8 years ago
BM
• 0
3
votes
14
replies
4.2k
views
Moderated t-test in Anova
anova
moderated t-test
updated 8.9 years ago by
Gordon Smyth
50k • written 9.0 years ago by
shaheryar
• 0
8
votes
4
replies
5.8k
views
Multiple Comparisons EdgeR
edger
multiple comparisons
anova
glm
updated 8.9 years ago by
Ryan C. Thompson
★ 7.9k • written 8.9 years ago by
chickenchamp4
▴ 20
4
votes
2
replies
9.2k
views
DESeq2 LRT output help
deseq2
LRT
anova
9.0 years ago
rclaire
▴ 20
3
votes
1
reply
1.5k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger
anova
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
mmclean
• 0
2
votes
8
replies
3.8k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger
ANOVA
Design matrix
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
chwhite
• 0
3
votes
2
replies
2.5k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger
anova
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
chwhite
• 0
3
votes
3
replies
10k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2
Anova
updated 2.5 years ago by
Michael Love
42k • written 9.7 years ago by
alex.pelletier
▴ 10
32 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Awards
• All
Scholar
to
Mike Smith
★ 6.5k
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Locations
• All
Melbourne, Australia,
21 minutes ago
United States,
32 minutes ago
United States,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 555 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6