Showing : BioMart • reset
0
votes
0
replies
38
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
1 day ago • updated 18 hours ago Abiologist • 0
1
vote
0
replies
64
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
5 days ago Aleena ▴ 30
0
votes
3
replies
178
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 4 weeks ago by 65k • written 4 weeks ago by ▴ 30
2
votes
2
replies
222
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 4 weeks ago by 65k • written 4 weeks ago by • 0
0
votes
1
reply
168
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 6 weeks ago by 65k • written 6 weeks ago by • 0
0
votes
1
reply
329
views
error in mapIds function
mapIds biomaRt
updated 11 weeks ago by 700 • written 12 weeks ago by • 0
0
votes
2
replies
489
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago eefernan5 • 0
1
vote
1
reply
248
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
0
votes
1
reply
237
views
biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
5
replies
490
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
6
votes
9
replies
865
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
1
reply
468
views
Error with biomaRt
biomaRt
updated 4 months ago by ★ 6.5k • written 4 months ago by • 0
4
votes
2
replies
395
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 4 months ago by ★ 4.0k • written 4 months ago by • 0
2
votes
2
replies
687
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago bd2000 ▴ 30
1
vote
0
replies
240
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
0
votes
2
replies
419
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
763
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
3
replies
431
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
4
votes
12
replies
1.0k
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
3
votes
2
replies
454
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
1
vote
2
replies
705
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
849
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
6 months ago • updated 11 weeks ago ScafioRuo • 0
11
votes
10
replies
7.4k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 8 weeks ago by • 0 • written 6 months ago by ▴ 20
0
votes
3
replies
496
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
4
replies
699
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
0
votes
2
replies
387
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
0
replies
398
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
9 months ago ali.oghabian • 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 9 months ago by ★ 4.0k • written 9 months ago by ▴ 10
1
vote
5
replies
625
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by 65k • written 9 months ago by ▴ 10
1
vote
2
replies
640
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
3
replies
809
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 10 months ago by • 0
0
votes
1
reply
638
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 10 months ago by 65k • written 10 months ago by • 0
0
votes
1
reply
1.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 10 months ago by 42k • written 10 months ago by ▴ 30
2
votes
4
replies
980
views
Use with_go along with other filters in getBM function
Annotation biomaRt
12 months ago • updated 11 months ago RuBBiT0 ▴ 10
1
vote
2
replies
824
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
1
reply
849
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 12 months ago by • 0
0
votes
3
replies
598
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 13 months ago by ★ 6.5k • written 13 months ago by • 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by ▴ 30
0
votes
1
reply
1.4k
views
biomaRt - NameSpace loading failed
biomaRt bioma
updated 13 months ago by ★ 6.5k • written 13 months ago by • 0
0
votes
3
replies
695
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 13 months ago by 42k • written 13 months ago by • 0
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 13 months ago by ★ 2.0k • written 13 months ago by • 0
0
votes
3
replies
735
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 13 months ago by 65k • written 14 months ago by • 0
0
votes
2
replies
801
views
Retrieving true orthologs between species BiomaRt
Orthologs BiomaRt
updated 14 months ago by 65k • written 14 months ago by • 0
0
votes
4
replies
985
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
15 months ago Dr. • 0
0
votes
0
replies
712
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
15 months ago ginie.dub • 0
3
votes
3
replies
1.7k
views
transcript name mapping between human and mouse
biomaRt getLDS
updated 15 months ago by 65k • written 15 months ago by ▴ 20
1
vote
4
replies
744
views
mmc57bl6nj_gene_ensembl biomaRt
biomaRt
16 months ago Maryam • 0
1
vote
3
replies
860
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
17 months ago mbansal • 0
1
vote
3
replies
795
views
Older source of biocFileCache package
biomaRt
updated 17 months ago by ★ 6.5k • written 18 months ago by • 0
1
vote
3
replies
1.5k
views
Error using biomaRt
biomaRt
updated 18 months ago by ★ 6.5k • written 18 months ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Locations • All
The city by the bay, 8 minutes ago
South Korea, 17 minutes ago
Australia, 29 minutes ago
Italy, 34 minutes ago
Ghana/KNUST, 56 minutes ago
Traffic: 454 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6