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Biostrings
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3
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4
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272
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Store output of matchPWM()
biostrings
Biostrings
16 days ago • updated 4 days ago
mat149
▴ 70
0
votes
1
reply
155
views
Trimming a section of a scaffold from a genome
Biostrings
GenomeAssembly
updated 7 weeks ago by
James W. MacDonald
65k • written 7 weeks ago by
Karen
• 0
2
votes
2
replies
256
views
From a DNAStringSet to a data.frame
Biostrings
7 weeks ago
ramiro.barrantes
▴ 10
1
vote
5
replies
457
views
Biostrings: read*StringSet() functions leave open file handles
Biostrings
10 weeks ago • updated 8 weeks ago
Gerhard Thallinger
▴ 180
0
votes
0
replies
174
views
How to search for a string in a DNAStringSet dataset?
Biostrings
4 months ago
Angela Michalichyn
• 0
2
votes
6
replies
796
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
nromerov
• 0
1
vote
3
replies
552
views
AAbin vs DNAbin structures
Biostrings
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
rogerb
• 0
0
votes
2
replies
721
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 12 months ago by
sandmann.t
▴ 70
0
votes
5
replies
2.9k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 12 days ago
Henrik Bengtsson
★ 2.4k
9 results • Page
1 of 1
Recent ...
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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