Bioconductor DEGs

Showing : DEGs • reset

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21k

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deseq2 rna-seq DEGs cooks cutoff

updated 2.3 years ago by rickap • 0 • written 5.3 years ago by aishu.jp ▴ 30

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5.0k

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RNASeq EnhancedVolcano DEGs

updated 2.9 years ago by Kevin Blighe ★ 3.9k • written 2.9 years ago by robledoj13 • 0

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4.1k

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heatmap DEGs RNAseq DESeq2

updated 4.8 years ago by mikhael.manurung ▴ 270 • written 4.8 years ago by danikadigiacomo • 0

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2.7k

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limma microarray DEGs p values lfc

6.9 years ago rkp • 0

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2.4k

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DESeq2 DEGs

2.9 years ago • updated 2.8 years ago Ming ▴ 380

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2.3k

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edger DEGs normalization

updated 4.3 years ago by Gordon Smyth 50k • written 4.3 years ago by anikng ▴ 10

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2.1k

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limma heatmap DEGs

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by lawarde.ankita1 ▴ 30

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1.4k

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heatmaps DEGs PCA

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by MOHAMMAD • 0

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1.1k

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edger degs paired design

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by takumima ▴ 10

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1.1k

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edgeR DEGS common disperion

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by baus87 • 0

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1.0k

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DEGs DESeq2

3.4 years ago 2021yearsold • 0

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1.0k

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deseq2 rrpp DEGs RNAseq

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by gmchaput • 0

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1000

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edger DEGs

4.4 years ago • updated 4.3 years ago anikng ▴ 10

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992

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DESeq2 Nullcook'svalues 2x3 DEGs

3.1 years ago andreia ▴ 10

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977

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RNAseq edgeR DEGs

updated 2.2 years ago by Gordon Smyth 50k • written 2.8 years ago by Ming ▴ 380

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920

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edgeR DEGs

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by RR • 0

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889

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clusterProfiler Bioconductor R DEGs

3.9 years ago tpm • 0

-6

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844

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complicated.contrast edgeR DEGs

20 months ago Mike • -60

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841

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mircomb mrna mirna degs interaction

3.9 years ago andreia ▴ 10

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794

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deseq2 mircomb degs dems

updated 3.9 years ago by Michael Love 42k • written 3.9 years ago by andreia ▴ 10

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792

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edgeR DEGs DESEQ2 RNASeqData

2.3 years ago Raito92 ▴ 60

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632

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DESeq2 Complicated.contrast DEGs

updated 20 months ago by Michael Love 42k • written 20 months ago by Mike • -60

22 results • Page 1 of 1

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Comment: Create protein sequences including variants from a VCF file by Yun • 0

This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object

Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0

Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…

Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k

FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…

Votes

Comment: How to correctly adjust for gender in edgeR

Create protein sequences including variants from a VCF file

A: DEXSeq design formula

Answer: SGSeq: moving toward diffex from SGSeq analysis

Answer: How to design DEXSeq formula for multiple variables

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