Bioconductor DEs

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409

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 17 days ago by James W. MacDonald 65k • written 18 days ago by Alexandre • 0

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142

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Des DESeq2

updated 4 weeks ago by hemantcnaik • 0 • written 4 weeks ago by Sahar • 0

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234

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DESeq2 DEs

8 weeks ago feather-W • 0

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513

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DESeq2 des

updated 17 months ago by Michael Love 42k • written 18 months ago by Devin • 0

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571

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DES DESIGN

updated 20 months ago by Michael Love 42k • written 20 months ago by mike • 0

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624

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DESeq2 DES

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by heikki.sarin ▴ 10

6 results • Page 1 of 1

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Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k

FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…

Comment: ChAMP installation issue by shepherl 3.9k

Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…

Answer: Gene set enrichment analysis by Guido Hooiveld ★ 3.9k

No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…

Votes

A: DEXSeq time course design

using variable in design formula

differential expression for Single-cell RNAseq data using edgeR

Why p value inconsistent when using different number of pathway score?

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

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