Bioconductor DMR

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1.4k

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DMR Methylation R Gviz

updated 6 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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925

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bumphunter DMR methylation minfi

4.3 years ago i.s.brorson • 0

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3.6k

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bsseq dmr ttest pvalue

updated 8.3 years ago by James W. MacDonald 65k • written 8.3 years ago by enricoferrero ▴ 660

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1.5k

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dmrcate dmr analysis dmr

updated 7.3 years ago by Tim Peters ▴ 180 • written 7.3 years ago by alexandria.andrayas ▴ 10

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1.2k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Ellen O • 0

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.3 years ago by l.kremer • 0

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by enricoferrero ▴ 660

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4.2k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.4 years ago by rafa ▴ 60 • written 7.4 years ago by chelsey.ju • 0

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861

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DMR bumphunter EPIC chip

4.3 years ago i.s.brorson • 0

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810

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ChAMP DMR

updated 4.0 years ago by Yuan Tian ▴ 290 • written 4.0 years ago by olive8306 • 0

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1.2k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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1.8k

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dmr MethylationArrayData DMRcatedata

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Julie • 0

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545

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edgeR DMR

updated 16 months ago by Michael Love 42k • written 16 months ago by Fiona • 0

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757

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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1.3k

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ChAMP minfi DMR dmr analysis lasso

8.6 years ago AST ▴ 60

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1.4k

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bumphunter DMR doparallel multicore

updated 10 months ago by Alessandro • 0 • written 6.0 years ago by arce.domingo.1407 • 0

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717

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methylsig no replicates dmr

5.8 years ago nilaycan • 0

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1.7k

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ChAMP DMR champ.DMR

5.6 years ago yuabrahamliu • 0

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1.7k

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methylation linear model dmr bsseq biseq

8.5 years ago enricoferrero ▴ 660

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737

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BiSeq testClusters error dmr

3.9 years ago akhaira • 0

20 results • Page 1 of 1

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Comment: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.

Answer: How to run allelic imbalance in apeglm by Michael Love 42k

You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Got you. Thanks again for your comments.

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…

Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k

Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …

Votes

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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