Showing : EGSEA • reset
3
votes
5
replies
290
views
Help with running egsea()
EGSEA
11 days ago • updated 10 days ago Chris ▴ 10
0
votes
1
reply
289
views
EGSEA with Affymetrix data
EGSEA
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
1
reply
411
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA EGSEAdata EGSEA123 DifferentialExpression
updated 8 months ago by 65k • written 8 months ago by • 0
0
votes
1
reply
768
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea EGSEA123
13 months ago neilzhao ▴ 30
0
votes
3
replies
2.0k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 23 months ago by 3.9k • written 23 months ago by ★ 2.0k
6
votes
6
replies
2.8k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 3.6 years ago by • 0 • written 4.9 years ago by ▴ 70
1
vote
0
replies
729
views
EGSEA - clarification of values in the Stats Table
egsea limma
4.7 years ago rocanja ▴ 60
0
votes
2
replies
1.3k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
4.7 years ago fgol ▴ 10
9
votes
7
replies
20k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea gsva piano egsea
updated 5 months ago by ▴ 10 • written 6.8 years ago by ▴ 130
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 6.2 years ago by 50k • written 6.2 years ago by • 0
1
vote
0
replies
1.0k
views
EGSEA install licensed KEGG data
EGSEA KEGG EGSEAdata
6.3 years ago john.thompson ▴ 10
0
votes
0
replies
858
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix egsea
6.3 years ago Stefano Mangiola ▴ 10
0
votes
5
replies
2.7k
views
EGSEA generateReport() error "no adj nodes"
EGSEA EGSEA123
updated 6.5 years ago by ▴ 40 • written 6.5 years ago by ★ 2.0k
1
vote
1
reply
1.1k
views
EGSEA : unable to plot heatmaps.
EGSEA R bioconductor
6.7 years ago RV • 0
0
votes
2
replies
1.5k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.1 years ago irizarnaunk • 0
2
votes
7
replies
1.8k
views
EGSEA - failing to write report
EGSEA write
updated 7.3 years ago by ▴ 40 • written 7.3 years ago by ▴ 20
2
votes
4
replies
1.7k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
updated 9 days ago by ▴ 10 • written 7.4 years ago by ▴ 190
0
votes
4
replies
1.9k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 7.6 years ago by ▴ 40 • written 7.6 years ago by • 0
18 results • Page 1 of 1
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
Sweden, just now
United States, 11 minutes ago
UPF, Barcelona, Spain, 11 minutes ago
United States, 32 minutes ago
Ireland, 1 hour ago
Traffic: 323 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6