Bioconductor Epigenetics

Showing : Epigenetics • reset

0

votes

4

replies

396

views

R biostatistics limma Epigenetics

3 months ago • updated 12 weeks ago Jitendra ▴ 10

0

votes

5

replies

621

views

stattistics epicarray Epigenetics DMRcate

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by Jitendra ▴ 10

3

votes

4

replies

909

views

Epigenetics EpigeneticsWorkflow DMRcate

8 months ago • updated 7 months ago Jitendra ▴ 10

1

vote

1

reply

374

views

statistics Epigenetics limma

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jitendra ▴ 10

4 results • Page 1 of 1

Recent ...

Replies

Answer: How to run allelic imbalance in apeglm by Michael Love 42k

You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Got you. Thanks again for your comments.

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…

Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k

Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …

Answer: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k

Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …

Votes

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Awards • All