Showing : GOseq • reset
2
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3
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263
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package goseq seems to be not available on the latest version of R
goseq
updated 12 days ago by 50k • written 14 days ago by ▴ 20
1
vote
2
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278
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
10 weeks ago thomas • 0
1
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4
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462
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goseq, warning and strange plot from nullp
goseq
3 months ago boczniak767 ▴ 720
0
votes
1
reply
615
views
Downstream analysis with Differentially Expressed Genes
DESeq2 GO goseq FunctionalAnnotation
updated 18 months ago by ▴ 10 • written 18 months ago by • 0
0
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5
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2.0k
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GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 23 months ago by 65k • written 23 months ago by ▴ 10
0
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2
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849
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goseq: Wallenius Vs Fisher's Noncentral Hypergeometric Distribution
goseq
2.1 years ago Steve Pederson ▴ 170
1
vote
2
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835
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
2.2 years ago • updated 2.1 years ago m.glymenaki • 0
0
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0
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759
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Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 2.2 years ago by 42k • written 2.2 years ago by • 0
1
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10
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2.5k
views
How to run Goseq for list of ensembl gene IDs
goseq
3.1 years ago Lucky • 0
1
vote
4
replies
1.5k
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goseq package loading issues
DESeq2 goseq
3.2 years ago avinashi • 0
3
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9
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1.9k
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 3.2 years ago by 65k • written 3.3 years ago by • 0
2
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3
replies
1.7k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 3.3 years ago by 65k • written 3.3 years ago by ▴ 30
2
votes
2
replies
1.1k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 3.4 years ago by 65k • written 3.5 years ago by • 0
0
votes
1
reply
927
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non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
1
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2
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901
views
GOSeq analysis in rice
goseq
3.9 years ago • updated 3.8 years ago Jitendra ▴ 10
0
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2
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722
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Goseq_analysis related help
goseq
3.9 years ago kumararya563 • 0
0
votes
0
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484
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go seq related help, where I need to do mapping between go term and the protein -id
goseq
3.9 years ago kumararya563 • 0
3
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2
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1.1k
views
Goseq analysis related help.
annotation goseq
updated 3.9 years ago by ★ 13k • written 3.9 years ago by • 0
0
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0
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838
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How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
4.1 years ago hasse.bossenbroek • 0
4
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5
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1.8k
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Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
4.4 years ago gdalsky ▴ 40
0
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1
reply
2.2k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
4.7 years ago Raito92 ▴ 60
2
votes
6
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1.1k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 4.7 years ago by ★ 6.5k • written 4.7 years ago by ▴ 60
1
vote
1
reply
1.3k
views
GOseq analysis with only upregulated or downregulated genes
goseq
updated 5.1 years ago by ▴ 310 • written 5.1 years ago by ▴ 160
2
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2
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1.1k
views
Using GOseq for custom gene set enrichment test
goseq
updated 5.3 years ago by 50k • written 5.3 years ago by • 0
2
votes
2
replies
2.9k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 5.5 years ago by 65k • written 5.5 years ago by • 0
4
votes
10
replies
3.0k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
8.6 years ago • updated 5.5 years ago Jakub ▴ 50
1
vote
3
replies
1.9k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 40
0
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0
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883
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
5.7 years ago zhu • 0
0
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1
reply
1.2k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
5.7 years ago TB18 • 0
1
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1
reply
1.2k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
3
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2
replies
1.0k
views
numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 5.8 years ago by 65k • written 5.8 years ago by • 0
1
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9
replies
2.2k
views
Using goseq with unsupported organism
goseq
updated 5.8 years ago by 65k • written 5.8 years ago by • 0
0
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0
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944
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GOseq No Underrepresented Categories
goseq go enrichment
5.9 years ago mart1139 • 0
8
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10
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1.6k
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Genes listed in GO categories
goseq biomart
updated 5.9 years ago by 50k • written 5.9 years ago by • 0
0
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2
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891
views
goseq with hypergeometric method
goseq
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 40
0
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0
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1.3k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
6.1 years ago nancyjwahl7 • 0
2
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6
replies
2.0k
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
6.2 years ago casey.rimland ▴ 150
0
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6
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1.4k
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How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
6.2 years ago dusan.petrovic • 0
0
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2
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3.7k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
0
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3
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1.2k
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What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 6.3 years ago by 50k • written 6.3 years ago by • 0
0
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1
reply
2.6k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
1
reply
1.7k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 6.5 years ago by 65k • written 6.5 years ago by ▴ 10
1
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2
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2.9k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
0
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1
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1.2k
views
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
6.6 years ago mgdrnl • 0
2
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3
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1.8k
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GOseq error on running nullp
goseq GO term
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
0
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1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
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2
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1.6k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 10
0
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0
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1.3k
views
gene length file for GOseq
goseq
6.7 years ago mictadlo ▴ 10
2
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2
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1.4k
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 6.7 years ago by ★ 11k • written 6.7 years ago by ▴ 10
0
votes
3
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1.6k
views
goseq after edgeR
edger goseq
updated 6.7 years ago by ★ 28k • written 6.7 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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