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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
19 months ago
Amy_
• 0
3
votes
10
replies
2.8k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 6 months ago by
zlskidmore
▴ 30 • written 22 months ago by
abhisikta
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Michel
• 0
0
votes
0
replies
1.6k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
23 months ago
e
• 0
0
votes
1
reply
1.0k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.5 years ago by
zlskidmore
▴ 30 • written 3.5 years ago by
Jeni
▴ 10
0
votes
1
reply
706
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.6 years ago
sheneicechang
• 0
0
votes
0
replies
917
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.7 years ago • updated 4.6 years ago
sheneicechang
• 0
0
votes
1
reply
1.1k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.5 years ago by
zlskidmore
▴ 30 • written 5.5 years ago by
ZihaoXing
• 0
0
votes
1
reply
837
views
Issues with lohSpec
genvisr
lohSpec
5.9 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.1k
views
Copy Number plot cnSpec - how to order samples
genvisr
6.0 years ago
cedric.vmdl
• 0
0
votes
4
replies
1.9k
views
GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.3 years ago by
zlskidmore
▴ 30 • written 7.3 years ago by
Bogdan
▴ 670
2
votes
5
replies
2.7k
views
GenVisR Installation error message
genvisR
8.2 years ago
Deep Adhya
▴ 20
13 results • Page
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Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Dario Strbenac
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shepherl
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