Showing : Genesis • reset
0
votes
0
replies
63
views
Conditional analysis
GENESIS
8 days ago SuperDad • 0
0
votes
1
reply
244
views
GENESIS: error in crossprod
GENESIS
3 months ago Stephanie M. Gogarten ▴ 870
0
votes
2
replies
445
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 5 months ago by ▴ 870 • written 5 months ago by • 0
0
votes
2
replies
431
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 6 months ago by ▴ 870 • written 6 months ago by • 0
1
vote
1
reply
491
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 6 months ago by 66k • written 6 months ago by ▴ 10
0
votes
0
replies
310
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
7 months ago mailtoshivam13 • 0
2
votes
5
replies
810
views
assocTestSingle output with GxE
GENESIS
updated 11 months ago by ▴ 870 • written 11 months ago by • 0
0
votes
1
reply
465
views
Reference categories for factors
assocTestSingle GENESIS
written 15 months ago by • 0
0
votes
2
replies
732
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
19 months ago Monica • 0
1
vote
2
replies
4.2k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 3.3 years ago by • 0 • written 4.5 years ago by • 0
0
votes
1
reply
865
views
Approximations to Est and Est.SE in GENESIS
GENESIS
3.5 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
703
views
X chromosome analyses for males in GENESIS
GENESIS
3.5 years ago Stephanie M. Gogarten ▴ 870
0
votes
3
replies
1.4k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 3.8 years ago by ▴ 870 • written 3.8 years ago by • 0
0
votes
1
reply
806
views
using GENESIS R package with non-human species
genesis gwastools
3.9 years ago Stephanie M. Gogarten ▴ 870
0
votes
2
replies
930
views
Association testing model in GENESIS
genesis
updated 3.9 years ago by ▴ 870 • written 3.9 years ago by • 0
0
votes
1
reply
1.2k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 4.0 years ago by ▴ 870 • written 4.0 years ago by • 0
0
votes
8
replies
1.6k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.3 years ago alipka ▴ 10
2
votes
1
reply
687
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 4.3 years ago by ▴ 870 • written 4.3 years ago by ▴ 10
0
votes
0
replies
878
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
4.5 years ago astridite • 0
2
votes
1
reply
821
views
Why did the Wald test disappear from GENESIS?
genesis
4.5 years ago Stephanie M. Gogarten ▴ 870
1
vote
3
replies
1.3k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
4.6 years ago Corey.Cox • 0
1
vote
1
reply
1.0k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 4.6 years ago by ▴ 870 • written 4.6 years ago by ▴ 10
3
votes
6
replies
1.4k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 4.6 years ago by ▴ 870 • written 4.6 years ago by ▴ 10
2
votes
4
replies
1.1k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 4.7 years ago by ▴ 870 • written 4.7 years ago by • 0
0
votes
3
replies
1.7k
views
Can't install Genesis
Genesis Installation
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by ▴ 10
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 4.8 years ago by ▴ 70 • written 4.8 years ago by • 0
6
votes
11
replies
2.8k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by • 0
0
votes
1
reply
928
views
betas for binary outcome
genesis
5.2 years ago Stephanie M. Gogarten ▴ 870
0
votes
13
replies
2.3k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 5.2 years ago by ▴ 870 • written 5.2 years ago by • 0
4
votes
2
replies
1.8k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
5.6 years ago • updated 5.3 years ago Stephanie M. Gogarten ▴ 870
0
votes
1
reply
999
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.3 years ago naglemi ▴ 10
1
vote
1
reply
943
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 5.5 years ago by ▴ 70 • written 5.5 years ago by ▴ 10
1
vote
1
reply
946
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 5.6 years ago by ▴ 870 • written 5.6 years ago by • 0
0
votes
1
reply
918
views
Using previously calculated PCs in GENESIS
genesis snprelate
5.7 years ago Stephanie M. Gogarten ▴ 870
0
votes
1
reply
1.0k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 5.7 years ago by ▴ 30 • written 5.7 years ago by ▴ 10
0
votes
1
reply
798
views
selecting SNPs and samples in GENESIS
genesis
5.8 years ago Stephanie M. Gogarten ▴ 870
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 5.8 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
3
votes
4
replies
1.5k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 5.9 years ago by ▴ 70 • written 5.9 years ago by ▴ 10
2
votes
8
replies
1.7k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
6.1 years ago GENOMIC_region • 0
0
votes
7
replies
1.8k
views
GENESIS: king2mat: subscript out of bounds
genesis
6.1 years ago Stephanie M. Gogarten ▴ 870
40 results • Page 1 of 1
Recent ...
Replies
Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
Awards • All
Popular Question to shepherl 3.9k
Popular Question to Guido Hooiveld ★ 4.0k
Popular Question to Chris ▴ 10
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Robert Castelo ★ 3.3k
Locations • All
WEHI, Melbourne, Australia, 12 minutes ago
Canada, 14 minutes ago
United States, 46 minutes ago
The city by the bay, 1 hour ago
Australia, 1 hour ago
Traffic: 451 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6