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How to find sites with H3K27me3 loss?
Chip Seq
Histone
H3K27me3
macs
diffbind
4.7 years ago
researcher
• 0
3
votes
4
replies
2.0k
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Interpretation of cross correlation plot to determine fragment length
csaw
chip-seq
histone
updated 7.4 years ago by
Aaron Lun
★ 28k • written 7.4 years ago by
siklenkak
• 0
2 results • Page
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Comment: Ploting of normalized counts after batch removal
by
ATpoint
★ 4.2k
You can use ComBat-seq from the sva package to regress covariates such as the pairing information. Advantage is that it returns "raw correc…
Answer: Ploting of normalized counts after batch removal
by
Michael Love
42k
You can't really plot counts with variance from nuisance covariates removed. I would go the route of using VST data instead (see FAQ).
Answer: SingleR Label.Ont
by
Burbon Burbonovich
• 0
While exploring different providers on my favorite gaming platform, I stumbled upon the Igrosoft section at [https://slotscity.com/provider…
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Votes
Answer: SingleCellExperiment and SingleR for identifying T cell subsets
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
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