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JunctionSeq
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2
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2
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1.2k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
3.3 years ago • updated 3.2 years ago
n.tear
▴ 20
0
votes
1
reply
830
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.5 years ago
stuart
▴ 10
0
votes
1
reply
838
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
7.1 years ago
rachelrodgers12
• 0
0
votes
0
replies
836
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.3 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
949
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
7.3 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.4k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 7.4 years ago by
Steve Lianoglou
★ 13k • written 7.4 years ago by
l.frank
• 0
0
votes
0
replies
838
views
Problems running JunctionSeq
junctionseq
7.5 years ago
jbono
▴ 10
0
votes
0
replies
850
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
7.6 years ago
stuart
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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