Bioconductor KEGG

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GO KEGG gage pathview

3 days ago danalvoronov ▴ 10

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132

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 25 days ago by James W. MacDonald 65k • written 25 days ago by fernanda.backsouza ▴ 10

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481

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clusterProfiler GenomicDistributionsData KEGG

27 days ago • updated 24 days ago fernanda.backsouza ▴ 10

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231

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 26 days ago by Guido Hooiveld ★ 4.0k • written 29 days ago by fernanda.backsouza ▴ 10

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214

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Pathways clusterProfiler gseKEGG KEGG

5 weeks ago julia_mcdonough • 0

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278

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enrichKEGG KEGGgraph KEGG

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3 months ago by cinzia.spagnoli • 0

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375

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KEGGREST KEGG RNASeq

6 months ago mch • 0

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1.2k

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pathview kegg KEGG

updated 7 months ago by Benji Bromberg ▴ 20 • written 8 months ago by Mauricio Diego • 0

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1.1k

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 9 months ago by Guido Hooiveld ★ 4.0k • written 9 months ago by Milan ▴ 10

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361

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axolotl KEGG GOstats clusterProfiler

10 months ago georgii.vdovin • 0

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1.1k

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pathview KEGG Oryza_sativa

11 months ago Jiyoung Lee • 0

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576

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timecourse KEGG DESeq2

updated 11 months ago by Michael Love 42k • written 11 months ago by Fred • 0

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1.3k

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KEGG limma

written 14 months ago by andrewsm • 0

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2.6k

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KEGG gometh

updated 12 months ago by Aung • 0 • written 14 months ago by pedro-marra ▴ 10

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2.0k

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KEGG clusterProfiler

updated 4 months ago by Guido Hooiveld ★ 4.0k • written 14 months ago by ruiqi.li ▴ 10

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1.9k

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clusterProfiler enrichment KEGG

updated 3 months ago by cinzia.spagnoli • 0 • written 23 months ago by AP • 0

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1.5k

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kegg enrichkegg clusterprofiler

updated 5 months ago by EvaLan • 0 • written 5.8 years ago by bekah ▴ 40

17 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180