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NMF
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0
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1
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3.0k
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NMF installation with current R version
NMF
Biobase
updated 24 months ago by
shepherl
3.9k • written 2.0 years ago by
Abhishek
• 0
5
votes
5
replies
1.7k
views
Running NMF for single cell
NMF
scater
3.6 years ago
lirongrossmann
▴ 40
0
votes
0
replies
418
views
NMF in single cell analysis
NMF
ZeiselBrainData
3.9 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.4k
views
Error in NMF estimation
MutationalPatterns
NMF
5.0 years ago
TRASA
• 0
0
votes
7
replies
3.0k
views
nmf function not working
somaticsignatures
NMF
updated 5.5 years ago by
Xin
• 0 • written 5.9 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
799
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.9 years ago
Seymoo
• 0
0
votes
1
reply
1.1k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.2 years ago by
shepherl
3.9k • written 6.2 years ago by
samuel.fux
• 0
0
votes
6
replies
2.8k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 6.6 years ago by
grimmmmer
• 0 • written 7.3 years ago by
ns
• 0
0
votes
4
replies
2.4k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 7.0 years ago by
Michael Love
42k • written 7.0 years ago by
noname
• 0
0
votes
0
replies
1.2k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.2 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.2k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
thrabe
• 0
0
votes
1
reply
1.6k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 8.5 years ago by
Jeff Leek
▴ 650 • written 8.5 years ago by
kw10
• 0
0
votes
1
reply
1.4k
views
NMF Package error
NMF
bioconductor
R
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
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Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Dario Strbenac
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Koen Van den Berge
▴ 180
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shepherl
3.9k
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Ken C
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