Bioconductor PCAtools

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2

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DESeq2 PCAtools

updated 16 days ago by Michael Love 42k • written 18 days ago by Aaliya • 0

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8

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DESeq2 RSTUDIO PCAtools

updated 18 days ago by swbarnes2 ★ 1.4k • written 19 days ago by Aaliya • 0

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5

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edgeR PCAtools

updated 6 weeks ago by Gordon Smyth 50k • written 6 weeks ago by Fabian • 0

3 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…

Comment: ChAMP installation issue by shepherl 3.9k

Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…

Answer: Gene set enrichment analysis by Guido Hooiveld ★ 3.9k

No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…

Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by zzrammal • 0

thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0

I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…

Votes

A: DEXSeq time course design

using variable in design formula

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