Showing : SC3 • reset
0
votes
3
replies
2.7k
views
Installing SC3: gfortran error on Mac M1
SC3
2.6 years ago krp • 0
1
vote
4
replies
1.5k
views
number of cell clusters in scRNA-seq
scran scater sc3
updated 4.9 years ago by ★ 28k • written 4.9 years ago by ▴ 670
0
votes
7
replies
2.2k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater limma scde scran sc3
4.9 years ago Bogdan ▴ 670
4
votes
5
replies
1.8k
views
Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.1 years ago by ▴ 150 • written 5.1 years ago by ▴ 50
0
votes
2
replies
966
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 5.2 years ago by ▴ 150 • written 5.2 years ago by • 0
0
votes
1
reply
1.3k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 5.4 years ago by ▴ 150 • written 5.5 years ago by • 0
0
votes
2
replies
934
views
Failure to cluster SC3
SC3
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by • 0
1
vote
1
reply
1.2k
views
A question about log_transformed
SC3
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
0
votes
2
replies
917
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.0 years ago by ▴ 150 • written 6.0 years ago by • 0
1
vote
1
reply
891
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by ▴ 10
0
votes
1
reply
1.2k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
1
vote
1
reply
1.5k
views
Batch effect removal before SC3?
SC3 batch effect removebatcheffect
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by ▴ 10
1
vote
8
replies
2.4k
views
SC3_estimate_k formatting error?
sc3 scater
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 10
5
votes
2
replies
6.0k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment sc3 scater
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 10
4
votes
5
replies
1.8k
views
SC3 gene clusters
SC3 single cell single-cell Tutorial
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 20
1
vote
1
reply
1.5k
views
Does SC3 correct counts for gene length?
sc3 scater single-cell rna-seq biclustering
updated 6.7 years ago by ▴ 150 • written 6.8 years ago by ▴ 20
0
votes
1
reply
3.4k
views
Import .mtx file in R
sc3
updated 6.9 years ago by ▴ 150 • written 6.9 years ago by • 0
4
votes
2
replies
1.4k
views
sc3_plot_expression, colour labels
sc3 single-cell
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 20
3
votes
3
replies
1.4k
views
Sharing SC3_interactive results
SC3 single-cell shiny
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 20
4
votes
3
replies
1.9k
views
using SC3 and scater for bulk-RNAseq
sc3 scater scRNAseq
updated 7.2 years ago by ▴ 150 • written 7.2 years ago by ★ 1.5k
2
votes
5
replies
1.9k
views
sc3_prepare function error
sc3 scater single-cell single cell
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ★ 1.5k
3
votes
2
replies
1.3k
views
SC3 tutorial error
SC3
updated 7.5 years ago by ▴ 150 • written 7.5 years ago by ▴ 30
3
votes
1
reply
1.4k
views
SC3 with latent variable corrected counts
SC3 single cell
updated 7.6 years ago by ▴ 150 • written 7.6 years ago by ▴ 10
23 results • Page 1 of 1
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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