Showing : SNPRelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
18 months ago m610110001 • 0
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2
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969
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.2 years ago by ▴ 870 • written 2.2 years ago by • 0
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1.1k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.5 years ago by • 0
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821
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SNPRelate handling of missing genotypes
SNPRelate
2.3 years ago serpalma.v ▴ 60
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0
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704
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
2.6 years ago Bhargavi • 0
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1
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938
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 3.4 years ago by • 0 • written 3.4 years ago by • 0
3
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1
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1.1k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
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1
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814
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 4.9 years ago by ▴ 30 • written 4.9 years ago by • 0
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1
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877
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.0 years ago by ▴ 30 • written 5.0 years ago by ▴ 60
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1
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1.6k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by • 0
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992
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PCA axis description SNPRelate
SNPRelate PCA
updated 5.1 years ago by ▴ 870 • written 5.1 years ago by ▴ 60
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1
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3.7k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by • 0
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913
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Using previously calculated PCs in GENESIS
genesis snprelate
5.6 years ago Stephanie M. Gogarten ▴ 870
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1
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1.3k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 6.0 years ago by ▴ 30 • written 6.0 years ago by ▴ 40
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2
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1.6k
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Error converting vcf to gds
snprelate vcf gds
updated 6.1 years ago by ▴ 30 • written 6.1 years ago by • 0
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2
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1.6k
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Cannot read plink files correctly
snprelate Tutorial
updated 7.0 years ago by ▴ 30 • written 7.0 years ago by • 0
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1
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1.5k
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SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 7.9 years ago by ▴ 30 • written 7.9 years ago by • 0
3
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2
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1.8k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.0 years ago by ▴ 30 • written 8.0 years ago by ▴ 40
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9
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6.2k
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unable to update mgcv package
mgcv snprelate
updated 8.4 years ago by 25k • written 8.4 years ago by • 0
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4
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2.4k
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NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 8.5 years ago by ▴ 30 • written 8.5 years ago by ▴ 10
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936
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RADseq chromosomes unknown
snprelate RADseq Stacks
8.5 years ago clive.darwell • 0
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1.9k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
11.2 years ago Stephanie M. Gogarten ▴ 870
22 results • Page 1 of 1
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning by angelaesper43 • 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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