Bioconductor SingleCellData

Showing : SingleCellData • reset

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264

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imcRtools SingleCellData imcdatasets SpatialWorkflow

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by Simon • 0

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517

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tidyverse R SingleCellExperiment SingleCellData

updated 5 months ago by daenerystargaryen56 • 0 • written 5 months ago by Sitapriya • 0

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377

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AnnotationHubSoftware SingleCellData annotationTools

updated 5 months ago by ATpoint ★ 4.1k • written 6 months ago by yw24418 • 0

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714

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DropletUtils SingleCellData

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by p.vlachou-efstathiou • 0

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937

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singleR SingleCellExperiment SingleCellData

10 months ago Matvii Mykhailichenko • 0

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642

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SingleCellData ComputationalBiology

13 months ago Chrysothemis ▴ 10

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750

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DimensionReduction SingleCellData multiomics MachineLearning

17 months ago Diego's • 0

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554

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SingleCell SingleCellData

updated 19 months ago by ATpoint ★ 4.1k • written 19 months ago by Romina • 0

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796

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SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

20 months ago k1m ▴ 20

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932

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SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment

20 months ago Romina • 0

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978

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SingleCellData splatter

updated 2.0 years ago by luke.zappia ▴ 50 • written 2.1 years ago by Fatima • 0

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805

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GSVA SingleCellData

updated 2.2 years ago by Robert Castelo ★ 3.3k • written 2.2 years ago by Amna • 0

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1.7k

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biobase SingleCellData seurat SingleCell

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by NGS_enthusiast • 0

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1.9k

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SingleCellExperiment DropletUtils SingleCellData

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.4 years ago by msn ▴ 10

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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