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SpatialExperiment
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Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
4 weeks ago
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Job:
Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics
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SingleCell
Spatial
SpatialExperiment
11 weeks ago
Peter Hickey
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Job:
Bioinformatics Spatial Omics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
SpatialExperiment
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11 months ago
Peter Hickey
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Answer: Error when running topGO with KS statistic and elim agorithm
by
James W. MacDonald
66k
You'll probably have to figure this out yourself. That error is coming from a non-exported function called `.sigGroups.elim`, which iterate…
Answer: Cluster columns in Pheatmap
by
James W. MacDonald
66k
This support site is meant for helping people with Bioconductor packages, and `pheatmap` isn't one of them, so you should be posting on bio…
Comment: Cluster columns in Pheatmap
by
elefth.pavlos
▴ 40
Hi, You mean to take the average expression of each group per gene and plot only 2 columns with averages?
Answer: Normalisation using clinical traits in RNA seq using DESeq2
by
ATpoint
★ 4.2k
See the vignette, it's a FAQ: https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-st…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Please could you comment on this @rory
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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Wei Shi
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Gordon Smyth
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jovel_juan
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ATpoint
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Wageningen University, Wageningen, the Netherlands,
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