Bioconductor TFBSTools

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693

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TFBSTools R forloop

updated 2.5 years ago by onlineclasshelpnow • 0 • written 2.5 years ago by HELEN • 0

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647

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TFBSTools FASTA RStudio

2.5 years ago HELEN • 0

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780

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.5 years ago by James W. MacDonald 65k • written 2.5 years ago by HELEN • 0

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841

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error TFBSTools R

2.6 years ago • updated 2.5 years ago HELEN • 0

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630

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TFBSTools RStudio R

2.6 years ago HELEN • 0

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2.3k

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pwm tfbstools jaspar

updated 6.6 years ago by Ge Tan ▴ 20 • written 6.7 years ago by chrisclarkson100 ▴ 50

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TFBSTools looping PFMatrixList PFMatrix bioconductor

7.0 years ago nathan.lawlor03 • 0

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1.1k

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bioconductor tfbstools

updated 7.6 years ago by Ge Tan ▴ 20 • written 7.6 years ago by laurabuggiotti • 0

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1.3k

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tfbstools jaspar

updated 8.6 years ago by Ge Tan ▴ 20 • written 8.6 years ago by JasonLouisStein • 0

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1.4k

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tfbstools

updated 9.0 years ago by Ge Tan ▴ 20 • written 9.1 years ago by franceskrussell • 0

10 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180