Bioconductor TXT

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EdgeR normalization fastq txt TMM

updated 2.1 years ago by Gordon Smyth 50k • written 8.5 years ago by hamidrezarazzaghian • 0

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710

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Affymetrix CEL TXT

updated 4.5 years ago by James W. MacDonald 66k • written 4.5 years ago by pbachali ▴ 50

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507

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read.table TXT

updated 4.6 years ago by James W. MacDonald 66k • written 4.6 years ago by ekl • 0

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897

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Annotation GEO TXT

updated 4.6 years ago by Sean Davis 21k • written 4.6 years ago by ekl • 0

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723

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Files TXT

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by ekl • 0

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qPCRset object nondetects r package txt

updated 7 months ago by Nat.Nataren • 0 • written 6.4 years ago by s.m.may • 0

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r TXT codelink

8.9 years ago Agaz Hussain Wani ▴ 260

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Comment: Deseq2 by Ram ▴ 210

Cross-posted on biostars: https://www.biostars.org/p/9596031/

Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0

Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…

Answer: Best way to describe DEseq2 design by SamGG ▴ 350

Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …

Answer: Deseq2 by ATpoint ★ 4.2k

Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…

Comment: Counter-directional LFC shrinkage by Michael Love 42k

Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…

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Answer: Deseq2

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: When should I correct for batch effects

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Popular Question to Levi Waldron ★ 1.1k

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