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VariantFiltering
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Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
7 months ago
Bogdan
▴ 670
0
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1
reply
382
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VariantFiltering error
VariantFiltering
updated 10 months ago by
Robert Castelo
★ 3.3k • written 10 months ago by
Andrew Beggs
▴ 90
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1.5k
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Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
Mohamed
▴ 30
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3
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1.4k
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library VaraintFiltration looking for explanation of pedigree file
bioconductor
variantfiltering
6.7 years ago
Claus.Hultschig
• 0
3
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2
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1.5k
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filtering VCF files
variantannotation
variantfiltering
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Bogdan
▴ 670
0
votes
1
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1.1k
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Problems with autosomalRecessiveHomozygous
VariantFiltering
8.8 years ago
claire.simpson
• 0
4
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0
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1.5k
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News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
8.9 years ago
Matthew Ritchie
▴ 1000
1
vote
1
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1.3k
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retrieving phastConsScores via 'scores' from 'VariantFiltering' shows inconsistency
variantfiltering
phastcons
updated 9.1 years ago by
Robert Castelo
★ 3.3k • written 9.1 years ago by
Stefanie Tauber
▴ 40
0
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0
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1.7k
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problems installing VariantFiltering package
VariantFiltering
VariantFiltering
10.0 years ago
Robert Castelo
★ 3.3k
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed oneā¦
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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