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annotatr
•
reset
0
votes
0
replies
191
views
Annotatr Duplicate Entries
annotatr
AnnotationHub
3 months ago
hayleyw
• 0
0
votes
0
replies
166
views
annotatr rn7?
annotatr
4 months ago
chuanjiao6
• 0
0
votes
1
reply
1.1k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
updated 6 months ago by
Mahmoud
• 0 • written 3.4 years ago by
rohitsatyam102
▴ 20
0
votes
1
reply
551
views
custom annotations with annotatr
annotatr
12 months ago
luca.s
▴ 50
0
votes
1
reply
853
views
Problem with annotations using annotatr
annotatr
21 months ago
eric.rhoncalderon
• 0
0
votes
0
replies
722
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation
annotatr
2.4 years ago
Ahdee
▴ 50
0
votes
0
replies
818
views
annotatr with custom TxDb
GenomicFeatures
annotatr
genomicFe
3.1 years ago
António Miguel de Jesus Domingues
▴ 510
0
votes
0
replies
855
views
annotatr package: GRanges object contains out-of-bound ranges
annotatr
GenomicRanges
3.6 years ago
Nala
• 0
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.1 years ago
dakarai_esgdaille
▴ 10
1
vote
1
reply
1.4k
views
annotatr: CpG Island/Shore/Shelf IDs
annotatr
updated 5.5 years ago by
rcavalca
▴ 140 • written 5.5 years ago by
sorjuelal
• 0
0
votes
3
replies
1.3k
views
CpG site not annotated with annotatr
annotatr
cpg
updated 5.6 years ago by
rcavalca
▴ 140 • written 5.6 years ago by
soli5
• 0
0
votes
1
reply
941
views
ENSEMBL database for annotatr
annotatr
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
2
votes
2
replies
1.1k
views
Unexpected results from annotatr
annotatr
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
2
votes
2
replies
984
views
'fill_order' in annotatr
annotatr
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
0
votes
3
replies
1.1k
views
find intersections of genomic regions with built-in genomic annotations for S.Cerevisiae
annotatr
7.3 years ago
vivianengoune
• 0
0
votes
2
replies
1.6k
views
annotatr GRanges Error
annotatr
updated 7.3 years ago by
rcavalca
▴ 140 • written 7.3 years ago by
cguzman.roma
• 0
4
votes
2
replies
1.2k
views
Annotatr package not loading certain features
annotatr
updated 7.5 years ago by
Valerie Obenchain
★ 6.8k • written 7.5 years ago by
divyswar01
• 0
18 results • Page
1 of 1
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Replies
Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
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