Showing : biomart • reset
0
votes
2
replies
151
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
9 days ago • updated 6 days ago landenshanie ▴ 40
0
votes
0
replies
64
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
12 days ago • updated 10 days ago Abiologist • 0
1
vote
0
replies
93
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
15 days ago Aleena ▴ 30
1
vote
3
replies
221
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 5 weeks ago by 66k • written 5 weeks ago by ▴ 30
2
votes
2
replies
253
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 5 weeks ago by 66k • written 5 weeks ago by • 0
0
votes
1
reply
181
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 8 weeks ago by 66k • written 8 weeks ago by • 0
0
votes
1
reply
354
views
error in mapIds function
mapIds biomaRt
updated 3 months ago by 700 • written 3 months ago by • 0
0
votes
2
replies
510
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
3 months ago eefernan5 • 0
3
votes
3
replies
9.7k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by 66k • written 3.2 years ago by ▴ 10
1
vote
1
reply
254
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
0
votes
1
reply
243
views
biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
5
replies
527
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
6
votes
9
replies
928
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 4 months ago by • 0
1
vote
1
reply
514
views
Error with biomaRt
biomaRt
updated 4 months ago by ★ 6.5k • written 4 months ago by • 0
4
votes
2
replies
427
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 4 months ago by ★ 4.0k • written 4 months ago by • 0
2
votes
2
replies
702
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago bd2000 ▴ 30
1
vote
0
replies
256
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
0
votes
2
replies
438
views
Problem with loading ensembl version 105.
biomaRt
5 months ago RC • 0
0
votes
1
reply
796
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 66k • written 5 months ago by • 0
0
votes
3
replies
462
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 6 months ago by ▴ 30
4
votes
12
replies
1.0k
views
Ensembl down???
biomaRt
6 months ago • updated 5 months ago bas_work ▴ 30
3
votes
2
replies
470
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
6 months ago henrydionne ▴ 10
1
vote
2
replies
740
views
How to find stop codons for a list of genes
stopcodon biomaRt
6 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
870
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
6 months ago • updated 12 weeks ago ScafioRuo • 0
11
votes
10
replies
7.7k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 9 weeks ago by • 0 • written 7 months ago by ▴ 20
0
votes
3
replies
509
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 7 months ago by 50k • written 7 months ago by • 0
1
vote
4
replies
719
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
8 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
4.4k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 700 • written 21 months ago by ▴ 20
0
votes
2
replies
396
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
0
replies
405
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
9 months ago ali.oghabian • 0
1
vote
5
replies
643
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by 66k • written 9 months ago by ▴ 10
3
votes
2
replies
1.2k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 9 months ago by ★ 4.0k • written 9 months ago by ▴ 10
0
votes
3
replies
833
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 10 months ago by • 0
1
vote
2
replies
661
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
10 months ago Miguel • 0
0
votes
1
reply
646
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 10 months ago by 66k • written 10 months ago by • 0
0
votes
1
reply
1.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 10 months ago by 42k • written 10 months ago by ▴ 30
0
votes
1
reply
863
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 12 months ago by • 0
2
votes
4
replies
998
views
Use with_go along with other filters in getBM function
Annotation biomaRt
12 months ago RuBBiT0 ▴ 10
1
vote
2
replies
836
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
614
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 13 months ago by ★ 6.5k • written 13 months ago by • 0
0
votes
3
replies
1.5k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by ▴ 40
0
votes
1
reply
1.5k
views
biomaRt - NameSpace loading failed
biomaRt bioma
updated 13 months ago by ★ 6.5k • written 13 months ago by • 0
0
votes
3
replies
703
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 13 months ago by 42k • written 14 months ago by • 0
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 14 months ago by ★ 2.0k • written 14 months ago by • 0
0
votes
3
replies
746
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
2
replies
814
views
Retrieving true orthologs between species BiomaRt
Orthologs BiomaRt
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
5
replies
2.3k
views
Is biomaRt down?
biomart
updated 14 months ago by • 0 • written 5.4 years ago by • 0
0
votes
4
replies
996
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
15 months ago Dr. • 0
0
votes
0
replies
725
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
15 months ago ginie.dub • 0
3
votes
3
replies
1.8k
views
transcript name mapping between human and mouse
biomaRt getLDS
updated 16 months ago by 66k • written 16 months ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k
The source script of the C function is available, just take it and compile the longestConsecutive function yourself, that's the easiest I g…
Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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