Bioconductor Blocking

Showing : blocking • reset

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724

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voom blocking limma

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by Gerhard Thallinger ▴ 180

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708

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edgeR blocking

updated 3.0 years ago by Yunshun Chen ▴ 840 • written 3.0 years ago by Molly • 0

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942

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diffbind blocking model

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

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1.4k

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edger limma paired blocking ruvseq

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by ScA • 0

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2.0k

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limma repeated measurements blocking random effects

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Jane ▴ 10

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3.7k

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limma edger blocking paired samples

updated 5.5 years ago by Gordon Smyth 50k • written 5.5 years ago by anou ▴ 10

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818

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diffbind differential binding analysis blocking

updated 6.3 years ago by Rory Stark ★ 5.2k • written 6.4 years ago by zhangly811 • 0

7 results • Page 1 of 1

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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…

Comment: ChAMP installation issue by Tahirah • 0

Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k

Yes, you can use `limma`.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10