Bioconductor Bsgenome

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BSgenome

updated 11 weeks ago by James W. MacDonald 65k • written 3 months ago by Kate • 0

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561

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OrgDb BSgenome

6 months ago • updated 3 months ago mat149 ▴ 70

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609

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SNPlocs BSgenome

written 7 months ago by Stevie Pederson • 0

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721

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intron BSgenome.Hsapiens.UCSC.hg38 BSgenome

updated 11 months ago by ATpoint ★ 4.1k • written 11 months ago by Lillian • 0

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1.0k

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BSgenomeForge BSgenome

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by kyliecode • 0

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768

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bsgenome GenomicFeatures package

updated 11 months ago by Hervé Pagès 16k • written 12 months ago by Manish • 0

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874

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BSgenome

updated 4 months ago by eviatar.weizman • 0 • written 2.0 years ago by remerandmaxence ▴ 10

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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

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biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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