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cancerdata
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Job:
Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics
cancerdata
Pathways
4 months ago
omicsresearch
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2
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1.4k
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Error with TCGA package - TCGAbiolinks
TCGAbiolinks
RNASeq
CancerData
updated 21 months ago by
Tiago C. Silva
▴ 270 • written 23 months ago by
JAcky
• 0
2
votes
3
replies
1.3k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 2.5 years ago by
Steve Lianoglou
★ 13k • written 2.5 years ago by
Caitlin
▴ 50
1
vote
1
reply
1.2k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray
GEOquery
cancerdata
MicroarrayData
updated 2.7 years ago by
James W. MacDonald
66k • written 2.7 years ago by
Caitlin
▴ 50
0
votes
0
replies
710
views
Job:
PDRA in Computational Biophysics and Cancer Research, University of Manchester, UK
CancerData
StructuralGenomics
VirusStability
pH-dependence
2.8 years ago
jim.warwicker
• 0
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Comment: pathview error
by
Fara
• 0
Thank you for the reply. I already conducted the KEGG enrichment analysis and I got the pathway ID. So there is no doubt it cannot be map…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
bravaccinimirea
• 0
I am experiencing the same problem, I tried with all the advices I found in similar posts but nothing seems to work
Comment: can't open mghp.osn.xsede.org
by
merv
▴ 120
Seeing this issue today, now with the R 4.3 + Bioc 3.18 version of this package. It is the Bioconductor servers that redirect to this unrel…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
Brandon
▴ 20
I did try again...*repeatedly*...I even tried it on a VM. Thankfully I got it to work on the VM. I still can't get it to work on windows t…
Comment: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.1k
Hi, What do you get if you run the following `httr::HEAD()` command? I noticed that you have `libcurl` version 8.3.0 from `curl::curl_vers…
Votes
can't open mghp.osn.xsede.org
Answer: can't open mghp.osn.xsede.org
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Comment: recount3 problem downloading data from source sra
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