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cell proportion
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Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
4.2 years ago
grayapply2009
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Comment: Can I trust the differential expression analysis when the two groups overlap on
by
BioinfGuru
▴ 30
Did you make any headway? Have you tried plotting a [hierarchical clustering heatmap][1] on tpm normalised count data? It is simple and fa…
Comment: Ploting of normalized counts after batch removal
by
ATpoint
★ 4.2k
You can use ComBat-seq from the sva package to regress covariates such as the pairing information. Advantage is that it returns "raw correc…
Answer: Ploting of normalized counts after batch removal
by
Michael Love
42k
You can't really plot counts with variance from nuisance covariates removed. I would go the route of using VST data instead (see FAQ).
Answer: SingleR Label.Ont
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Burbon Burbonovich
• 0
While exploring different providers on my favorite gaming platform, I stumbled upon the Igrosoft section at [https://slotscity.com/provider…
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
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Answer: SingleCellExperiment and SingleR for identifying T cell subsets
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
Answer: makeExampleDESeqDataSet using pilot data
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