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deseq
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1
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354
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evaluate the variable importance on genes
DESeq2
deseq
3 months ago
Meme
• 0
0
votes
2
replies
355
views
Running DESeq on normalized data
deseq
DESeq2
updated 5 months ago by
ATpoint
★ 4.2k • written 5 months ago by
Hugo
• 0
2
votes
2
replies
554
views
Predicting missing values splines DESeq2
deseq
DESeq2
6 months ago
georgii.vdovin
• 0
0
votes
1
reply
404
views
Controling for Covariates With a Continuous Predictor Variable
Deseq
DESeq2
updated 6 months ago by
Michael Love
42k • written 6 months ago by
georgii.vdovin
• 0
0
votes
1
reply
701
views
Can I transform already normalized rna-seq data with Z-score?
Z-score
RNASeqData
Deseq
DESeq2
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
khaserdene99
• 0
0
votes
3
replies
1.0k
views
Difference between DESeqDataSetFromMatrix() function and DESeq() function
DESeq
DESeq2
updated 9 months ago by
ATpoint
★ 4.2k • written 10 months ago by
Abir.khazaal
▴ 10
0
votes
4
replies
688
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 10 months ago by
Michael Love
42k • written 10 months ago by
Ndimensional
▴ 20
6
votes
11
replies
26k
views
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq
deseq2
updated 10 months ago by
Erika
• 0 • written 9.3 years ago by
c.lieftink@nki.nl
▴ 40
8 results • Page
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Comment: How to run allelic imbalance in apeglm
by
parayod376
• 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process")
by
James W. MacDonald
66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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