Showing : enrichplot • reset
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196
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 4 weeks ago by ★ 4.0k • written 5 weeks ago by • 0
2
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2
replies
289
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
8 weeks ago Eva ▴ 10
2
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6
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1.1k
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
3 months ago • updated 12 weeks ago Tobias • 0
0
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1
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258
views
visualizing GSEA showCategory question
enrichplot
updated 3 months ago by 65k • written 3 months ago by • 0
0
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2
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634
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enrichPlot error when plotting topGO results
topGO enrichplot
updated 7 months ago by 65k • written 7 months ago by • 0
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0
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367
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HeatPlot - Genes selections
enrichplot stringr heatplot
8 months ago ruba-mahmoud • 0
0
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3
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1.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 6 months ago by • 0 • written 9 months ago by • 0
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5
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1.1k
views
plot enrichment results
enrichplot clusterProfiler
updated 10 months ago by ▴ 730 • written 10 months ago by • 0
2
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4
replies
1.6k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
11 months ago Tyroone • 0
0
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1
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1.2k
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Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 14 months ago by ★ 4.0k • written 14 months ago by • 0
0
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1
reply
673
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 15 months ago by 42k • written 16 months ago by • 0
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5
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2.1k
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How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 8 months ago by • 0 • written 17 months ago by • 0
2
votes
3
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2.3k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 19 months ago by ▴ 120 • written 19 months ago by ▴ 10
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1
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1.6k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 19 months ago by ★ 1.2k • written 20 months ago by • 0
3
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5
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3.2k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 20 months ago by ★ 1.2k • written 23 months ago by ▴ 30
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3
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3.7k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 22 months ago by ★ 4.0k • written 22 months ago by ▴ 10
0
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1
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995
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 23 months ago by ★ 4.0k • written 23 months ago by ▴ 10
1
vote
3
replies
5.5k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
0
votes
1
reply
1.0k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
5
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13
replies
4.3k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.2 years ago by ▴ 40 • written 2.2 years ago by • 0
1
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1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
2.5 years ago fatimaruizdelabastida • 0
0
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1
reply
1.4k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.5 years ago by • 0 • written 2.5 years ago by ▴ 10
0
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2
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1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
2.6 years ago Adarsh • 0
2
votes
4
replies
2.7k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.6 years ago Pahi ▴ 10
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0
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1.3k
views
EnrichGO
R enrichplot
updated 2.8 years ago by ★ 3.9k • written 2.8 years ago by • 0
1
vote
4
replies
4.1k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.1 years ago by • 0 • written 2.8 years ago by • 0
2
votes
6
replies
6.4k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.4 years ago • updated 3.3 years ago Emilia ▴ 30
0
votes
1
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1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.4 years ago by ▴ 30 • written 3.4 years ago by • 0
2
votes
1
reply
712
views
Parsing geoms to enrichplot
enrichplot
3.8 years ago Francois Marchildon ▴ 20
0
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0
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964
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similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.0 years ago jan.soderman • 0
0
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1
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2.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
2
votes
4
replies
2.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.3 years ago by 65k • written 4.3 years ago by ▴ 30
8
votes
5
replies
4.1k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
5.0 years ago • updated 23 months ago charles.foster ▴ 160
0
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0
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1.2k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.2 years ago yurigorelik ▴ 10
0
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0
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1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
35 results • Page 1 of 1
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Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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