Bioconductor Exon

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DEXSeq exon_definition exon

updated 10 months ago by Alejandro Reyes ★ 1.9k • written 10 months ago by zhangpeng1202 • 0

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392

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exon AnnotationHubData

12 months ago mahima.g • 0

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866

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splicing Exon featureCounts subread DEXSeq

24 months ago • updated 23 months ago NIK • 0

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665

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DEXSeq exon

updated 2.2 years ago by Alejandro Reyes ★ 1.9k • written 2.2 years ago by jochen • 0

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1.3k

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DEXSeq exon memory dispersions estimateDispersions

4.1 years ago andreismolnikov00 • 0

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1.4k

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Annotatr CDS Exon UTR

updated 6.3 years ago by rcavalca ▴ 140 • written 6.3 years ago by xie186 • 0

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2.8k

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rsubread featurecounts exon mRNAseq

updated 6.9 years ago by Wei Shi ★ 3.6k • written 6.9 years ago by inah ▴ 10

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1.8k

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rnaseq exon quasr

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by sven.schuierer • 0

8 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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