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gdcdownload
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Why 3 RNA-seq bams for same sample/aliquot_barcode?
manifest
GDCdownload
GenomicDataCommons
9 months ago
xiaofeiwang198266
• 0
0
votes
0
replies
748
views
Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
21 months ago
Manav
• 0
1
vote
1
reply
910
views
Problem downloading TCGA projects with the method "client"
bioconductor
GDCdownload
4.2 years ago
sann
• 0
0
votes
0
replies
948
views
GDC RNA seq files (replicates?)
gdc data
TCGA
gdcdownload
5.4 years ago
coyoung
▴ 10
0
votes
0
replies
916
views
Error in move(i, file.path(path, i)) : I could not find the file: 95a5d709-7454-4f76-84b0-a505c32baeb5 ; GDCdownload error
tcgabiolinks
gdcdownload
tcga-brca
6.4 years ago
fawazfebin
▴ 60
3
votes
5
replies
2.0k
views
GDCdownload error in TCGAbiolinks: Invalid zip name argument
tcgabiolinks
gdcdownload
unzip
updated 6.4 years ago by
Tiago Chedraoui Silva
▴ 260 • written 6.4 years ago by
fawazfebin
▴ 60
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Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
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