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genomeIntervals
•
reset
0
votes
0
replies
158
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals
GenomicRanges
9 weeks ago
gshweta95
• 0
2
votes
3
replies
1.4k
views
GRanges object from gene list
granges
bed
genomicranges
genomeintervals
deseq2
6.4 years ago
rbronste
▴ 60
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
rubi
▴ 110
3
votes
2
replies
1.3k
views
What is the main difference between nclist and intervaltree algorithm in GenomicRanges packages ?
nclist
genomeintervals
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
Jurat Shahidin
▴ 80
0
votes
1
reply
1.2k
views
cannot load genomeIntervals package
genomeIntervals
updated 8.9 years ago by
Nicolas Delhomme
▴ 320 • written 9.2 years ago by
mhz
• 0
1
vote
8
replies
1.7k
views
Bug: readGff3 isRightOpen should be FALSE
genomeintervals
updated 8.9 years ago by
Nicolas Delhomme
▴ 320 • written 9.0 years ago by
sjackman
• 0
0
votes
1
reply
2.6k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 11.2 years ago by
Dan Tenenbaum
★ 8.2k • written 11.2 years ago by
Wim Kreinen
▴ 100
0
votes
0
replies
894
views
convert "Genome_intervals_stranded" to "Genome_intervals"? (girafe)
Annotation
convert
genomeIntervals
Annotation
convert
genomeIntervals
12.3 years ago
delhomme@embl.de
★ 1.2k
0
votes
1
reply
932
views
gff files: how to tell if right-open interval convention used?
genomeIntervals
genomeIntervals
updated 13.2 years ago by
Hervé Pagès
16k • written 13.2 years ago by
Julien Gagneur
▴ 50
0
votes
0
replies
1.1k
views
stranded findOverlaps
Sequencing
Annotation
GO
rtracklayer
IRanges
genomeIntervals
Sequencing
Annotation
GO
14.3 years ago
Robert Castelo
★ 3.3k
10 results • Page
1 of 1
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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★ 4.2k
The source script of the C function is available, just take it and compile the longestConsecutive function yourself, that's the easiest I g…
Comment: How to run allelic imbalance in apeglm
by
parayod376
• 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process")
by
James W. MacDonald
66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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