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Showing :
geometadb
•
reset
1
vote
2
replies
742
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 10 months ago by
malat1_t
▴ 10
5
votes
3
replies
2.0k
views
Cannot download GEOmetadb sqlite file
GEOmetadb
updated 3 months ago by
ilayahari
• 0 • written 6.5 years ago by
arnaud.ceol.pro
▴ 10
5
votes
2
replies
694
views
outdated GEOmetadb.sqlite
GEOmetadb
15 months ago • updated 3 months ago
Robert Castelo
★ 3.3k
1
vote
1
reply
499
views
Why dbConnect GEOmetadb_demo.sqlite shows some information while dbConnect GEOmetadb.sqlite shows no information
GEOmetadb
GEOmetadb.sqlite
dbConnect
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Lee
▴ 10
7
votes
5
replies
6.2k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 9.0 years ago by
Sean Davis
21k
0
votes
2
replies
1.0k
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
21 months ago • updated 20 months ago
jfertaj
▴ 30
3
votes
2
replies
1.4k
views
Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
geometadb
GEO
R
bioconductor
updated 5.9 years ago by
Sean Davis
21k • written 5.9 years ago by
gaby8638
▴ 20
0
votes
4
replies
1.5k
views
GEOquery using keywords in R
GEO
geoquery
geometadb
updated 6.0 years ago by
Sean Davis
21k • written 6.0 years ago by
Didi
▴ 10
2
votes
1
reply
1.2k
views
GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs
geometadb
updated 6.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 6.6 years ago by
Bohdan Khomtchouk
▴ 10
0
votes
1
reply
1.1k
views
GEOmetadb urgent question!
R
geometadb
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
vasco.cluny
• 0
3
votes
0
replies
3.8k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
9.0 years ago
Sean Davis
21k
0
votes
1
reply
2.0k
views
Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
rohan bareja
▴ 200
0
votes
0
replies
1.7k
views
Fw: Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
10.5 years ago
rohan bareja
▴ 200
0
votes
4
replies
2.1k
views
Meta data for gene from GEO
GEOquery
GEOmetadb
GEOquery
GEOmetadb
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
getGEO vs GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
10.9 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.6k
views
GEOmetadb query to retrieve sample groups
GEOmetadb
GEOmetadb
updated 10.9 years ago by
Sean Davis
21k • written 11.0 years ago by
Thomas Hampton
▴ 750
0
votes
0
replies
1.3k
views
getGEO for very large files
GO
GEOmetadb
GO
GEOmetadb
13.1 years ago
Sean Davis
21k
0
votes
5
replies
2.1k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.7 years ago by
Alex Levitchi
▴ 30 • written 13.7 years ago by
Sean Davis
21k
0
votes
1
reply
1.5k
views
dynamic library() calls
GEOmetadb
GEOmetadb
13.9 years ago
Jeremiah H. Savage
▴ 110
0
votes
0
replies
1.3k
views
GEOquery question -- suppressing download for GPL queries?
Annotation
GEOquery
GEOmetadb
Annotation
GEOquery
GEOmetadb
14.2 years ago
Sean Davis
21k
0
votes
2
replies
1.3k
views
GEOmetadb query
aCGH
GO
aCGH
GEOmetadb
aCGH
GO
aCGH
GEOmetadb
updated 14.3 years ago by
Jack Zhu
▴ 170 • written 14.3 years ago by
BorisZybailov@gmail.com
▴ 10
0
votes
1
reply
1.8k
views
GEOmetadb: problem with SQLite database download
GEOmetadb
GEOmetadb
14.4 years ago
Axel Klenk
★ 1.0k
0
votes
13
replies
2.9k
views
GEOmetadb and gse organism type
Cancer
Breast
Organism
GEOmetadb
Cancer
Breast
Organism
GEOmetadb
updated 15.2 years ago by
Sean Davis
21k • written 15.2 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
0
replies
2.0k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
15.2 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.5k
views
Solved: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
15.7 years ago
gregory voisin
▴ 430
0
votes
1
reply
1.4k
views
GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
updated 15.7 years ago by
Sean Davis
21k • written 15.7 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.3k
views
problem with GEOquery
GEOmetadb
GEOmetadb
15.9 years ago
Sean Davis
21k
27 results • Page
1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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euge.eugenio
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Dario Strbenac
★ 1.5k
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Vincent J. Carey, Jr.
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