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GO KEGG gage pathview

14 days ago danalvoronov ▴ 10

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3.8k

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clusterProfiler GO GO enrichment genesetenrichment

updated 10 weeks ago by jandrade • 0 • written 6.5 years ago by Huang, Lei [BSD] - CRI ▴ 20

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317

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 12 weeks ago by belinda.phipson ▴ 40 • written 12 weeks ago by s.malik • 0

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402

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GO limma CAMERA

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Tyler Sagendorf ▴ 10

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510

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GO EnrichmentBrowser

updated 4 months ago by James W. MacDonald 66k • written 4 months ago by prity6459 • 0

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594

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GO ensembldb

7 months ago Rockbar • 0

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457

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go DESeq2

updated 8 months ago by James W. MacDonald 66k • written 8 months ago by Alvin • 0

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646

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GO biomaRt

updated 10 months ago by James W. MacDonald 66k • written 10 months ago by cstorer • 0

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5.1k

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clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 4.0k • written 3.3 years ago by Alberto • 0

9 results • Page 1 of 1

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Comment: How to run allelic imbalance in apeglm by parayod376 • 0

Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!

Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k

If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0

Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0

For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…

Votes

Reduce the number of nodes appear in the cnetplot of clusterprofiler

A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

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