Bioconductor Interactionset

Showing : interactionset • reset

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DEGcomparison DESeq2 InteractionSet pvalue

12 weeks ago • updated 11 weeks ago paria.alipour • 0

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671

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InteractionSet GInteractions

4 months ago Sarah ▴ 10

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445

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InteractionSet subsetByOverlaps GenomicInteractions

10 months ago LaureTomas ▴ 10

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797

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InteractionSet BuildReport

16 months ago • updated 15 months ago martin.grigorov ▴ 10

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1.0k

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InteractionSet

2.8 years ago noag • 0

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863

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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847

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diffHic HiC InteractionSet

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by girardot • 0

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.3k

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interactionset granges

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Vinicius Henrique da Silva ▴ 40

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.3k

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diffhic interactionset

7.8 years ago Vivek.b ▴ 100

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1.1k

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InteractionSet structural variants

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by tangming2005 ▴ 190

12 results • Page 1 of 1

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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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