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lfcthreshold
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4
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1.4k
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DESeq2 lfcThreshold - all my padj are equal to 1
DESeq2
lfcThreshold
20 months ago
Abir.khazaal
▴ 10
1
vote
2
replies
1.8k
views
DEseq2 anlysis - LfcThreshold and Lfcshrink options
lfcshrink
DESeq2
RNASeq
lfcthreshold
22 months ago
ClaudiaE
• 0
0
votes
5
replies
2.0k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 2.6 years ago by
Michael Love
42k • written 4.1 years ago by
Iryna
• 0
22
votes
17
replies
7.3k
views
DESeq2 1.20.0 lfcshrink function
deseq2
differential expression
logfoldchange
lfcshrink
lfcthreshold
updated 3.0 years ago by
Michael Love
42k • written 5.9 years ago by
emi.sch
▴ 30
0
votes
1
reply
1.1k
views
DESeq2 - shrunken log fold changes and threshold test
deseq2
lfcshrink
lfcthreshold
differential gene expression
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
corentinrichard374369
• 0
1
vote
2
replies
2.3k
views
[DESeq2] Results summary indicates LFC > and < 0 even with changed lfcThreshold
DESeq2
lfcThreshold
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
Mike
▴ 10
9
votes
2
replies
5.4k
views
log fold change threshold in Deseq2 - using lfcthreshold
lfcthreshold
deseq2
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
lirongrossmann
▴ 80
2
votes
1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 8.6 years ago by
Michael Love
42k • written 8.6 years ago by
mariakarand
▴ 20
8 results • Page
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Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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