Showing : limma • reset
15
votes
23
replies
2.1k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
7 weeks ago • updated 19 days ago Chris ▴ 10
15
votes
17
replies
1.3k
views
Why p value inconsistent when using different number of pathway score?
limma
29 days ago • updated 18 days ago Chris ▴ 10
3
votes
10
replies
478
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 10 days ago by 65k • written 12 days ago by • 0
5
votes
8
replies
8.9k
views
Limma design with continuous and categorical covariates
limma batch effect covariates microarray
updated 27 days ago by • 0 • written 7.8 years ago by ▴ 30
0
votes
7
replies
366
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
4 weeks ago • updated 27 days ago hortense96 • 0
3
votes
4
replies
266
views
Help with error using camera() in limma
CAMERA limma
19 days ago Chris ▴ 10
0
votes
3
replies
1.5k
views
Limma, eBayes different sample size of groups and adjustment
limma limma
updated 19 days ago by • 0 • written 13.1 years ago by ▴ 10
5
votes
3
replies
317
views
Log-cpm values from limma
limma edgeR RNASeq
updated 10 days ago by 50k • written 4 weeks ago by • 0
0
votes
3
replies
282
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 19 days ago by 65k • written 20 days ago by • 0
1
vote
2
replies
280
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
11 days ago • updated 10 days ago Dylan.Sheerin • 0
0
votes
2
replies
245
views
RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
4 weeks ago • updated 28 days ago catv • 0
1
vote
2
replies
407
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 16 days ago by 50k • written 16 days ago by • 0
0
votes
2
replies
192
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 27 days ago by • 0
2
votes
2
replies
1.1k
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 19 days ago by • 0 • written 8.0 years ago by • 0
2
votes
2
replies
285
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
12 days ago • updated 7 days ago zzrammal • 0
0
votes
1
reply
67
views
Subsetting RNAseq data | voomaByGroup()
limma
updated 1 day ago by 50k • written 2 days ago by • 0
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 12 days ago by 50k • written 5.6 years ago by ▴ 10
0
votes
1
reply
163
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 17 days ago by 50k • written 17 days ago by • 0
18 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
edgeR used a prior count which stabilizes LFC while DESeq2 does not. Note that the SE are larger in these cases so you don't have experime…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Good day ATpoint, Could you pls advise also ehy this error could happened design contains one or more variables with all samples having t…
Comment: How to run allelic imbalance in apeglm by euge.eugenio ▴ 20
@mikelove could you help me? Thanks!
Comment: ENCORI or starBase : ceRNA data retrieval using Web API and curl by ATpoint ★ 4.1k
This is not related to Bioconductor. Biostars is more suited where you posted already.
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
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Popular Question to Vincent J. Carey, Jr. 6.7k
Locations • All
United States, 2 minutes ago
Wageningen University, Wageningen, the Netherlands, 2 minutes ago
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United States, 10 minutes ago
Denver, University of Colorado Anschutz Medical Campus, 30 minutes ago
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