Bioconductor EPICV2

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400

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limma DMRcate MethylationArray EPICV2

updated 14 days ago by Gordon Smyth 50k • written 14 days ago by Kim • 0

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284

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 10 weeks ago by belinda.phipson ▴ 40 • written 10 weeks ago by s.malik • 0

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478

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by rae.alshammari ▴ 10

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760

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ChAMP EPICv2

updated 3 months ago by shuo • 0 • written 4 months ago by ChunkyJones • 0

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836

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 8 weeks ago by aldea85 • 0 • written 6 months ago by Courtney • 0

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1.7k

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minfiDataEPIC EpicV2

updated 8 months ago by Zuguang Gu ▴ 260 • written 9 months ago by Izabela.ams • 0

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1.9k

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ChAMP EPICv2

updated 4 weeks ago by shilpa • 0 • written 10 months ago by medha.suman • 0

7 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180