Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
limmaGUI
•
reset
0
votes
4
replies
1.4k
views
getting normexp (and log2 transformed) values - not further-processed M values
Microarray
limma
limmaGUI
Microarray
limma
limmaGUI
14.6 years ago
adoty@umd.edu
▴ 30
0
votes
6
replies
2.3k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI
limmaGUI
affylmGUI
limmaGUI
updated 15.8 years ago by
ilhami visne
▴ 10 • written 15.8 years ago by
Deanne Taylor
▴ 50
0
votes
9
replies
1.9k
views
Getting LimmaGUI to run
tkWidgets
widgetTools
limmaGUI
widgetInvoke
tkWidgets
widgetTools
limmaGUI
widgetInvoke
18.9 years ago • updated 18.8 years ago
chris umbricht
▴ 110
1
vote
5
replies
2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics
limma
impute
limmaGUI
Proteomics
limma
impute
limmaGUI
updated 8.9 years ago by
sm
• 0 • written 14.6 years ago by
Tom Wenseleers
▴ 60
0
votes
4
replies
1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma
limmaGUI
limma
limmaGUI
19.1 years ago
Gordon Smyth
50k
3
votes
6
replies
6.8k
views
Unable to install "limma" package on RStudio
Bioconductor
limma
limmaGUI
2.2 years ago
jaydengitt
• 0
0
votes
3
replies
1.4k
views
LimmaGUI Error
Normalization
GO
limmaGUI
ASSIGN
Normalization
GO
limmaGUI
ASSIGN
18.8 years ago
Brooke-Powell, Elizabeth
▴ 170
0
votes
3
replies
2.0k
views
Limma: correct calculation of B statistics (log odds)
limma
limmaGUI
limma
limmaGUI
updated 18.1 years ago by
Wittner, Ben
▴ 290 • written 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
2
replies
1.3k
views
"limma" and "Imagene"
GUI
limma
limmaGUI
GUI
limma
limmaGUI
updated 19.9 years ago by
Gordon Smyth
50k • written 19.9 years ago by
Breuk102
▴ 50
0
votes
2
replies
964
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma
limmaGUI
ASSIGN
limma
limmaGUI
ASSIGN
updated 19.5 years ago by
Gordon Smyth
50k • written 19.5 years ago by
Breuk102
▴ 50
0
votes
3
replies
1.3k
views
limma: print-tip loess and empty spots
Normalization
GO
GUI
limma
limmaGUI
Normalization
GO
GUI
limma
limmaGUI
17.0 years ago
Gordon Smyth
50k
0
votes
3
replies
1.2k
views
spot filtering
limma
limmaGUI
limma
limmaGUI
updated 18.8 years ago by
michael watson IAH-C
★ 3.4k • written 18.8 years ago by
Brooke-Powell, Elizabeth
▴ 170
0
votes
3
replies
1.4k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI
limma
limmaGUI
microRNA
GUI
limma
limmaGUI
microRNA
15.6 years ago
Gordon Smyth
50k
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI
limmaGUI
updated 19.9 years ago by
Gordon Smyth
50k • written 19.9 years ago by
Elizabeth Brooke-Powell
▴ 160
0
votes
2
replies
1.2k
views
problem detected during utilization of LimmaGUI
Microarray
limmaGUI
Microarray
limmaGUI
updated 14.5 years ago by
Seth Falcon
★ 7.4k • written 14.5 years ago by
Susana Gomes
▴ 10
1
vote
3
replies
369
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 4 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
Simran
• 0
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics
limma
limmaGUI
Genetics
limma
limmaGUI
updated 18.5 years ago by
STKH Steen Krogsgaard
▴ 150 • written 18.5 years ago by
Cecilia McGregor
▴ 110
0
votes
2
replies
883
views
Problem loading files into limmaGUI
limma
limmaGUI
limma
limmaGUI
updated 19.9 years ago by
Gordon Smyth
50k • written 19.9 years ago by
Elva Diaz
▴ 10
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray
Genetics
limma
limmaGUI
Microarray
Genetics
limma
limmaGUI
updated 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.1 years ago by
Gordon Smyth
50k
0
votes
2
replies
800
views
gcrma in affylmGUI
gcrma
limmaGUI
gcrma
limmaGUI
updated 20.0 years ago by
James Wettenhall
▴ 1000 • written 20.0 years ago by
Luckey, John
▴ 90
0
votes
2
replies
1.2k
views
limma Normalization question
Genetics
Normalization
limma
GeneSpring
limmaGUI
Genetics
Normalization
limma
GeneSpring
18.5 years ago
Gordon Smyth
50k
0
votes
2
replies
1.1k
views
help for limmaGUI
Microarray
limmaGUI
Microarray
limmaGUI
updated 17.0 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 17.0 years ago by
Ziping Zhang
▴ 10
0
votes
2
replies
1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI
limmaGUI
affylmGUI
limmaGUI
updated 15.8 years ago by
Ross Lazarus
▴ 90 • written 15.8 years ago by
Jarno Tuimala
▴ 140
0
votes
2
replies
1.1k
views
limmaGUI: Warning: ActiveTcl could not be found...
limmaGUI
limmaGUI
updated 20.6 years ago by
Marcelo Luiz de Laia
▴ 770 • written 20.6 years ago by
James Wettenhall
▴ 1000
0
votes
2
replies
2.2k
views
problem with tkrplot installation
limmaGUI
limmaGUI
updated 15.8 years ago by
James W. MacDonald
65k • written 15.8 years ago by
A Yulandi
▴ 20
0
votes
1
reply
911
views
limmaGUI and Agilent output files!
Microarray
limmaGUI
Microarray
limmaGUI
updated 19.8 years ago by
James Wettenhall
▴ 1000 • written 19.8 years ago by
Adrian Peres
▴ 30
0
votes
1
reply
797
views
Setting the spacing between duplicates in limmaGUI
limmaGUI
limmaGUI
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
Peter Baker CMIS, Indooroopilly
▴ 80
0
votes
1
reply
967
views
LimmaGUI
limmaGUI
limmaGUI
updated 20.2 years ago by
James W. MacDonald
65k • written 20.2 years ago by
Binita Dutta
▴ 100
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray
Cancer
affy
limma
limmaGUI
Microarray
Cancer
affy
limma
limmaGUI
updated 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.1 years ago by
Gordon Smyth
50k
0
votes
1
reply
852
views
LimmaGUI and limma
limma
limmaGUI
limma
limmaGUI
updated 19.7 years ago by
James Wettenhall
▴ 1000 • written 19.7 years ago by
Binita Dutta
▴ 100
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray
limma
limmaGUI
weaver
Microarray
limma
limmaGUI
weaver
updated 16.0 years ago by
Wang, Jixin
▴ 130 • written 16.0 years ago by
Keith Satterley
▴ 450
0
votes
1
reply
1.1k
views
Re: Limma GUI exporting
Microarray
limma
affylmGUI
limmaGUI
Microarray
limma
affylmGUI
limmaGUI
19.9 years ago
James Wettenhall
▴ 1000
0
votes
1
reply
1.3k
views
One-Color Agilent Data into Limma GUI
GO
limma
limmaGUI
GO
limma
limmaGUI
updated 16.6 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 16.6 years ago by
elliot harrison
▴ 230
0
votes
2
replies
1.2k
views
limmaGUI: target file and spot file
limmaGUI
limmaGUI
updated 15.8 years ago by
Mark Cowley
▴ 910 • written 15.8 years ago by
Jamila Bernardi
▴ 10
0
votes
1
reply
1.1k
views
asMatrixWeights: weights of unexpected shape
GUI
limma
limmaGUI
GUI
limma
limmaGUI
updated 15.6 years ago by
Christine Voellenkle
▴ 90 • written 15.6 years ago by
Gordon Smyth
50k
0
votes
1
reply
1.6k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization
limma
limmaGUI
Normalization
limma
limmaGUI
updated 15.6 years ago by
Paolo Innocenti
▴ 320 • written 15.6 years ago by
Christine Voellenkle
▴ 90
0
votes
1
reply
1.2k
views
Duplicated spots in limmaGUI
limmaGUI
limmaGUI
updated 17.1 years ago by
João Fadista
▴ 500 • written 17.1 years ago by
Wonjong Moon
▴ 80
0
votes
1
reply
1.2k
views
[Bioc] Tcl/TK pckage "Bwidget"
limmaGUI
limmaGUI
updated 17.1 years ago by
Andris Jankevics
▴ 10 • written 17.1 years ago by
Sean Davis
21k
0
votes
1
reply
1.1k
views
Re-scaling MA plot Y axis in LimmaGUI?
GUI
limma
limmaGUI
GUI
limma
limmaGUI
18.5 years ago
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
1
reply
1.2k
views
reference design
limma
limmaGUI
oligo
limma
limmaGUI
oligo
updated 18.0 years ago by
Naomi Altman
★ 6.0k • written 18.0 years ago by
bzzandrew@interfree.it
▴ 30
0
votes
2
replies
895
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization
limmaGUI
Normalization
limmaGUI
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
ying chen
▴ 40
0
votes
1
reply
783
views
Bioconductor or R courses
GO
limma
limmaGUI
GO
limma
limmaGUI
updated 19.1 years ago by
Seth Falcon
★ 7.4k • written 19.1 years ago by
Brooke-Powell, Elizabeth
▴ 170
0
votes
1
reply
805
views
limmaGUI and dupcor.series error
limmaGUI
limmaGUI
updated 19.9 years ago by
James Wettenhall
▴ 1000 • written 19.9 years ago by
Diego Diez
▴ 760
0
votes
1
reply
1.1k
views
Limma - Design related problem: Unconnected design and time-treatment interaction estimation
Microarray
Cancer
limma
limmaGUI
Microarray
Cancer
limma
limmaGUI
updated 17.3 years ago by
Naomi Altman
★ 6.0k • written 17.3 years ago by
Serge Eifes
▴ 90
0
votes
2
replies
862
views
Fwd: Getting LimmaGUI to run
limmaGUI
limmaGUI
updated 18.9 years ago by
Rob J Goedman
▴ 40 • written 18.9 years ago by
chris umbricht
▴ 110
0
votes
2
replies
1.2k
views
limmaGUI: Warning: ActiveTcl could not be found....
limmaGUI
limmaGUI
updated 20.6 years ago by
A.J. Rossini
▴ 810 • written 20.6 years ago by
Marcelo Luiz de Laia
▴ 770
0
votes
1
reply
888
views
problem in limmaGUI with Heat Diagram
limma
limmaGUI
limma
limmaGUI
updated 19.4 years ago by
James Wettenhall
▴ 1000 • written 19.4 years ago by
Breuk102
▴ 50
0
votes
1
reply
1.6k
views
Analysis Interface Projects
limma
limmaGUI
limma
limmaGUI
updated 20.7 years ago by
Dave Waddell
▴ 160 • written 20.7 years ago by
James Wettenhall
▴ 1000
0
votes
2
replies
999
views
Limma: background correction. Use or ignore?
limmaGUI
limmaGUI
updated 18.1 years ago by
James W. MacDonald
65k • written 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
1
reply
887
views
Different results Limma vs LimmaGUI?
limma
limmaGUI
limma
limmaGUI
updated 18.1 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 18.1 years ago by
Gordon Smyth
50k
50 results • Page
1 of 1
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Koen Van den Berge
▴ 180
Popular Question
to
shepherl
3.9k
Popular Question
to
Ken C
• 0
Locations
• All
The city by the bay,
1 minute ago
Hong Kong,
18 minutes ago
India,
51 minutes ago
Singapore,
57 minutes ago
Ireland,
1 hour ago
Traffic: 285 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6