Showing : marray • reset
1
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summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.4 years ago by 50k • written 9.4 years ago by ▴ 240
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1.4k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800
10.6 years ago Scott Robinson ▴ 130
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6
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1.6k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization affy marray nnNorm Microarray Normalization affy marray nnNorm
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by ★ 13k
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974
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Package/Function for Single Channel Microarray Spatial Normalization?
marray OLIN marray OLIN
10.8 years ago Guest User ★ 13k
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1
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1.8k
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How to subtract the background from foreground values in GenePix files
Normalization limma marray Normalization limma marray
updated 10.8 years ago by 66k • written 10.8 years ago by ★ 13k
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3
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1.3k
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Normalize background on marray Agilent object
Normalization limma PROcess marray Normalization limma PROcess marray
updated 10.9 years ago by 50k • written 10.9 years ago by ▴ 50
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3
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1.5k
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Normalize background on marray Agilent object
marray marray
10.9 years ago Guillermo Marco Puche ▴ 50
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1.0k
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Agilent Dual channel array input & marray
marray marray
11.0 years ago Guillermo Marco Puche ▴ 50
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1
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1.2k
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Unexpected output from Limma background subtraction & Normalization
Microarray Normalization limma marray puma Microarray Normalization limma marray puma
updated 3.3 years ago by 50k • written 11.1 years ago by ▴ 20
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1
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1.2k
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Unexpected Results from Limma background subtraction & marray normalizatoin
Microarray Normalization limma marray Microarray Normalization limma marray
updated 3.3 years ago by 50k • written 11.1 years ago by ▴ 20
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0
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913
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NAs introduced by marrayNorm after background subtraction with Limma
Normalization probe limma marray Normalization probe limma marray
11.1 years ago Guest User ★ 13k
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1.3k
views
normalizing two-color Agilent data from GEO...
marray marray
11.7 years ago Alan Derr ▴ 50
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1
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2.1k
views
Error by using gpr data with marray
limma marray ArrayExpress limma marray ArrayExpress
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 13k
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Error with read.SMD() of marray
marray marray
12.6 years ago Guest User ★ 13k
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0
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949
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load single-channel microarray
marray marray
12.7 years ago Paz Tapia Ramirez ▴ 150
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2
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1.1k
views
M values; and dist functions
marray marray
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 560
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2
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1.4k
views
gcrma - u133aaofav2probe error
Microarray gcrma marray Microarray gcrma marray
updated 13.2 years ago by 66k • written 13.2 years ago by ▴ 10
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2
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6.3k
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Error in Heatmap: Could not find function "heatmap.2"
PROcess marray PROcess marray
updated 13.8 years ago by ▴ 830 • written 13.8 years ago by ▴ 40
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0
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880
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maPalette() and the number of colors returned (bug?)
marray marray
14.0 years ago Ali Tofigh ▴ 30
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1
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1.1k
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Could I use "genefilter" package for MArray data ?
genefilter limma marray genefilter limma marray
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 230
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864
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MArray into data.frame for SPIA package
limma marray SPIA limma marray SPIA
14.2 years ago Gordon Smyth 50k
0
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11
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1.9k
views
Issue with limma and normalization of Agilent data generated with a 20-bit scan
Normalization limma marray Normalization limma marray
updated 14.2 years ago by 50k • written 14.2 years ago by ▴ 130
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1
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1.4k
views
Bug in vsn2
limma marray limma marray
updated 14.9 years ago by ★ 13k • written 14.9 years ago by ▴ 50
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1
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1.1k
views
Summarization of cDNA microarray data
marray marray
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 10
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1
reply
1.1k
views
Agilent miRNA
miRNA marray miRNA marray
updated 15.2 years ago by ▴ 40 • written 15.2 years ago by ▴ 200
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1
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1.1k
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problems with marray and gpr files
marray marray
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 40
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0
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876
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Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
15.9 years ago Matyas Flemr ▴ 10
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6
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1.7k
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limma and marray data import problem
Microarray Normalization limma PROcess marray Microarray Normalization limma PROcess
updated 16.0 years ago by 50k • written 16.0 years ago by ▴ 90
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2
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1.3k
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Fwd: Question about normalizing one color Agilent array using loess
Microarray Genetics Normalization limma marray Microarray Genetics Normalization limma
updated 16.0 years ago by ★ 13k • written 16.1 years ago by ▴ 30
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1
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959
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 16.0 years ago by ▴ 30 • written 16.1 years ago by 50k
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1
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1.5k
views
How to read a data.frame into limma or marray
Microarray Normalization limma marray Microarray Normalization limma marray
updated 16.5 years ago by ▴ 450 • written 16.5 years ago by ▴ 160
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1
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547
views
One directional spatial normalisation for microarray data
marray marray
updated 16.5 years ago by ★ 2.4k • written 16.5 years ago by ★ 3.4k
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3
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1.5k
views
tweaks for the heatmap ()?
Clustering marray Clustering marray
updated 16.6 years ago by ▴ 510 • written 16.6 years ago by ▴ 270
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4
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1.3k
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
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1
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1.2k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 230
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1
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1.1k
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creating a copy number array data object in DNA copy
GO marray GO marray
updated 16.7 years ago by 66k • written 16.7 years ago by ▴ 230
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8
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3.2k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.8 years ago by ▴ 20 • written 16.8 years ago by ▴ 100
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1
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3.2k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
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1
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1.7k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
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2
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1.2k
views
Error with arrayQuality
Microarray Cancer hexbin limma marray convert Microarray Cancer hexbin limma marray
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 50
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1
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1.1k
views
marray layout
Microarray marray Microarray marray
updated 16.9 years ago by ▴ 130 • written 16.9 years ago by ▴ 40
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1
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1.2k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 30
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0
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916
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
17.1 years ago grischa tödt ▴ 30
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0
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916
views
marray and limma error with lmFit
Microarray limma marray Microarray limma marray
17.1 years ago Gordon Smyth 50k
0
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0
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1.1k
views
marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.1 years ago Paquet, Agnes ▴ 500
0
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2
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1.5k
views
marray: problems loading genepix-files
marray marray
updated 17.2 years ago by ▴ 130 • written 17.2 years ago by ▴ 310
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1
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1.1k
views
Help with GenePix files
Normalization marray GLAD Normalization marray GLAD
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ▴ 310
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0
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1.4k
views
marray and limma error with lmFit
limma marray limma marray
17.2 years ago Gordon Smyth 50k
0
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0
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989
views
normalizeBetweenArrays gives an error
Normalization marray convert Normalization marray convert
17.6 years ago Gordon Smyth 50k
0
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0
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977
views
problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
17.6 years ago Vitalina Komashko ▴ 10
50 results • Page 1 of 1
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Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
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A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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