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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome
methods
GenomicRanges
4.7 years ago
Aditya
▴ 160
0
votes
1
reply
787
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Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
4.7 years ago
Aditya
▴ 160
2
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2
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1.1k
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SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
brendan.innes
▴ 20
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3
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1.1k
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How to clear a cached S4 method
devtools
S4
methods
cache
5.5 years ago
Michael Steinbaugh
▴ 90
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916
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.3 years ago
casey.rimland
▴ 150
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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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