Bioconductor Mirna-seq

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deseq2 rnaseq mirna-seq differential gene expression

written 6.2 years ago by klalit1803 • 0

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1.0k

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mirna-seq limma

updated 5.7 years ago by Gordon Smyth 50k • written 5.7 years ago by Michael Stone • 0

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934

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mirna-seq

updated 5.9 years ago by Levi Waldron ★ 1.1k • written 5.9 years ago by ndiayediop2 • 0

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800

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mirna-seq

6.0 years ago • updated 5.9 years ago ndiayediop2 • 0

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2.6k

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r survival analysis rtcga tcgabiolinks mirna-seq

5.9 years ago atakanekiz ▴ 30

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708

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deseq2 differentially expression mirna-seq mirna target prediction

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by Björn • 0

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DESeq2 mirna-seq small RNA-seq

updated 6.4 years ago by Michael Love 42k • written 6.4 years ago by CandiceChuDVM ▴ 40

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deseq2 mirna-seq experimental design differential expression

updated 7.0 years ago by Gavin Kelly ▴ 680 • written 7.0 years ago by francesco.gandolfi ▴ 10

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4.5k

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miRNA mirna-seq

updated 7.2 years ago by Jon Bråte ▴ 250 • written 7.2 years ago by just • 0

9 results • Page 1 of 1

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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

thank you!

Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

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biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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