Bioconductor Msigdb

Showing : msigdb • reset

votes

replies

199

views

geneset GeneSetEnrichment msigdb

6 weeks ago Seongsu • 0

votes

replies

257

views

msigdb gmt GSEA

written 8 weeks ago by Georg • 0

vote

2.0k

views

gseabase msigdb genesetcollection Tutorial

written 5.9 years ago by t.kuilman ▴ 170

vote

696

views

ssgsea GSVA biotype proteincoding msigdb

updated 5 months ago by Robert Castelo ★ 3.3k • written 5 months ago by snijesh ▴ 20

vote

1.2k

views

msigdb GSEABase GSVA

updated 2.1 years ago by Robert Castelo ★ 3.3k • written 2.1 years ago by forlani.luca • 0

votes

replies

4.1k

views

clusterprofiler GSEA MSIGDB

updated 6.2 years ago by Guangchuang Yu ★ 1.2k • written 6.2 years ago by thomasjenner333 • 0

vote

replies

1.4k

views

limma romer msigdb

updated 8.7 years ago by James W. MacDonald 65k • written 8.7 years ago by Jon Manning ▴ 40

votes

replies

1.3k

views

category gostats msigdb hypergeometric test

8.8 years ago petyuk ▴ 70

8 results • Page 1 of 1

Recent ...

Replies

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…

Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Awards • All