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oligoClasses
•
reset
0
votes
3
replies
1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
2
votes
8
replies
1.2k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
2.9 years ago • updated 2.8 years ago
efoss
▴ 10
2
votes
6
replies
3.8k
views
Can't install package oligoClasses
R
oligoClasses
ff
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
salamandra
▴ 20
2
votes
2
replies
2.0k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
5.9 years ago
GENOMIC_region
• 0
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
Aedin Culhane
▴ 510
2
votes
1
reply
1.3k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
ste0891
• 0
2
votes
4
replies
1.4k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo
oligoclasses
affy
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
mark.aaron.fisher
• 0
0
votes
2
replies
2.4k
views
Cannot install Oligo package
oligo
oligoclasses
7.8 years ago
Anna Dvorkin
▴ 40
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 9.0 years ago by
Jason Hubbard
▴ 20 • written 10.3 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
1.5k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo
oligoClasses
oligo
oligoClasses
10.4 years ago
Peter Crisp
▴ 10
0
votes
1
reply
1.5k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.4 years ago by
James W. MacDonald
65k • written 10.4 years ago by
Guest User
★ 13k
0
votes
8
replies
2.1k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 11.4 years ago by
James W. MacDonald
65k • written 11.4 years ago by
José LÓPEZ
▴ 110
0
votes
4
replies
2.8k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
11.4 years ago
Valor Becerra, Luis Miguel
▴ 30
3
votes
4
replies
1.7k
views
cause 'memory not mapped' when use oligo
oligo
oligoClasses
oligo
oligoClasses
updated 11.7 years ago by
Benilton Carvalho
▴ 50 • written 11.7 years ago by
Ou, Jianhong
★ 1.3k
0
votes
4
replies
3.0k
views
Error : package slot missing from signature for generic
Biobase
lumi
oligoClasses
Biobase
lumi
oligoClasses
11.8 years ago
Mark Cowley
▴ 910
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 12.2 years ago by
Benilton Carvalho
★ 4.3k • written 12.2 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.3k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.0 years ago
Min-Han Tan
▴ 40
0
votes
0
replies
873
views
Bioconductor Digest, Vol 68, Issue 7
oligo
pdInfoBuilder
oligoClasses
oligo
pdInfoBuilder
oligoClasses
15.6 years ago
Matt Settles
▴ 70
18 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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