Bioconductor PcaExplorer

Showing : pcaExplorer • reset

votes

replies

2.2k

views

pca2go pcaexplorer

updated 6.8 years ago by Federico Marini ▴ 150 • written 6.8 years ago by reubenmcgregor88 • 0

votes

replies

805

views

DESeq2 RNASeq PrincipalComponent pcaExplorer

written 18 months ago by James • 0

votes

replies

28k

views

DESeq2 pcaExplorer

updated 3.2 years ago by Michael Love 42k • written 3.2 years ago by vanbelj ▴ 30

votes

replies

1.8k

views

annotation go pcaExplorer AnnotationForge

updated 5.2 years ago by James W. MacDonald 66k • written 5.2 years ago by psutton • 0

votes

replies

1.6k

views

EDA pcaExplorer PCAtools PCA

updated 2.4 years ago by Miguel ▴ 20 • written 3.8 years ago by k.vitting.seerup ▴ 120

votes

replies

1.2k

views

PCAtools pcaExplorer pcaMethods

updated 23 months ago by Federico Marini ▴ 150 • written 23 months ago by m610110001 • 0

votes

replies

2.0k

views

GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 2.3 years ago by Federico Marini ▴ 150 • written 2.3 years ago by chase.mateusiak • 0

votes

replies

2.5k

views

PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.1 years ago Alan • 0

vote

replies

1.6k

views

pcaExplorer pca

updated 7.5 years ago by Federico Marini ▴ 150 • written 7.5 years ago by swaegers.janne • 0

votes

replies

590

views

DESeq2 pcaExplorer

updated 15 days ago by BioinfGuru ▴ 30 • written 17 days ago by Eric Katagirya • 0

vote

replies

1.4k

views

deseq2 pcaexplorer

6.8 years ago reubenmcgregor88 • 0

votes

1.2k

views

pcaexplorer genespca deseq2

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by sally_b86 • 0

12 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2 by Ram ▴ 210

Cross-posted on biostars: https://www.biostars.org/p/9596031/

Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0

Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…

Answer: Best way to describe DEseq2 design by SamGG ▴ 350

Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …

Answer: Deseq2 by ATpoint ★ 4.2k

Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…

Comment: Counter-directional LFC shrinkage by Michael Love 42k

Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…

Votes

Answer: Deseq2

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: When should I correct for batch effects

Awards • All

Popular Question to Levi Waldron ★ 1.1k

Popular Question to Laure Cougnaud ▴ 20