Showing : probe • reset
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how deal with multiplicate affy probes?
mgu74av2 probe affy mgu74av2 probe affy
updated 20.2 years ago by ▴ 80 • written 20.2 years ago by ▴ 50
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8
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1.9k
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Biological replication (was RNA degradation problem)
Normalization probe affy affyPLM Normalization probe affy affyPLM
18.3 years ago Naomi Altman ★ 6.0k
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7
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2.0k
views
analyzing HumanHT12 with lumi
Microarray Normalization probe lumi Microarray Normalization probe lumi
updated 14.7 years ago by ▴ 50 • written 14.7 years ago by ▴ 30
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12
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2.8k
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Does the strand of a microarray probe matter?
probe probe
updated 15.5 years ago by ▴ 160 • written 15.5 years ago by ▴ 830
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5
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1.3k
views
Subsetting data from RGList (Again)
probe probe
16.6 years ago elliot harrison ▴ 230
0
votes
10
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1.8k
views
AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
Microarray Annotation probe annotate affy AnnBuilder Microarray Annotation probe annotate
updated 17.9 years ago by ★ 2.9k • written 17.9 years ago by ★ 1.6k
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13
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2.0k
views
Invalid fold-filter
probe affy probe affy
updated 18.3 years ago by ★ 1.0k • written 18.3 years ago by ▴ 110
0
votes
5
replies
1.4k
views
single color microarray analysis
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
updated 19.2 years ago by 50k • written 19.2 years ago by ▴ 120
0
votes
8
replies
1.5k
views
Help with HyperGTest
Annotation probe GOstats Annotation probe GOstats
14.5 years ago Yue, Chen - BMD ▴ 60
0
votes
5
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1.4k
views
Annotation of Affymetrix hgu133plus2 chip
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 430
0
votes
9
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1.7k
views
metadata - annotation package changes
Annotation moe430a probe Annotation moe430a probe
updated 18.8 years ago by ★ 2.9k • written 18.8 years ago by ▴ 160
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votes
4
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1.3k
views
probe --> probe set mapping in CDF library files
cdf probe altcdfenvs cdf probe altcdfenvs
18.0 years ago • updated 18.1 years ago michael driscoll ▴ 30
0
votes
5
replies
1.2k
views
M vs A plots of affymetrix data
probe probe
18.2 years ago michael watson IAH-C ★ 3.4k
0
votes
7
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1.7k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 19.1 years ago by ▴ 170 • written 19.1 years ago by ▴ 430
0
votes
6
replies
1.3k
views
problems using simpleaffy
probe simpleaffy probe simpleaffy
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 510
0
votes
9
replies
2.0k
views
AgiMicroRna - FilterMicroRna question
probe probe
14.0 years ago • updated 13.9 years ago Neel Aluru ▴ 460
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votes
4
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1.1k
views
combineAffyBatch for HG-U133A and HG-U133Av2 GeneChips
probe matchprobes probe matchprobes
updated 19.6 years ago by ★ 13k • written 19.6 years ago by ▴ 120
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votes
4
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1.5k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
14.4 years ago • updated 14.3 years ago Michał Góralski ▴ 40
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votes
4
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1.6k
views
Summarizing two-channel data (RGList, MAList) for limma analysis
Normalization probe affy Normalization probe affy
updated 12.3 years ago by ▴ 90 • written 12.4 years ago by ▴ 290
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votes
4
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1.2k
views
Problems with Hu6800 and GCRMA...
Microarray hu6800 probe gcrma Microarray hu6800 probe gcrma
20.2 years ago Stiles, David NIH/NIDDK ▴ 50
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votes
5
replies
1.5k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 18.6 years ago by ★ 1.1k • written 18.6 years ago by ▴ 60
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votes
4
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1.1k
views
Recent changes to Bioconductor packages
probe probe
19.8 years ago • updated 19.7 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
9
replies
1.6k
views
RE: Advice on print-tip normalization
Cancer probe marray oligo Cancer probe marray oligo
updated 19.7 years ago by ▴ 50 • written 19.7 years ago by ▴ 70
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votes
7
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1.9k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.2 years ago by ▴ 630 • written 15.2 years ago by ▴ 370
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6
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1.5k
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
13.7 years ago Jenny Drnevich ★ 2.0k
0
votes
6
replies
1.4k
views
biomart scripting help
probe affy probe affy
updated 17.5 years ago by ▴ 380 • written 17.5 years ago by ▴ 320
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votes
3
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1.1k
views
memory usage ReadAffy() and probe level information
probe affy probe affy
updated 20.1 years ago by ▴ 180 • written 20.1 years ago by ▴ 70
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votes
3
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1.3k
views
limma and nested factors
probe affy limma probe affy limma
20.1 years ago Arne.Muller@aventis.com ▴ 620
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votes
6
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975
views
probe level annotation
probe probe
17.6 years ago Shi, Tao ▴ 720
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votes
14
replies
1.9k
views
from rat codelink to human locuslink
probe probe
updated 17.6 years ago by ▴ 580 • written 17.6 years ago by ★ 1.2k
0
votes
8
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1.5k
views
outlier removal from gene chip
probe probe
updated 17.7 years ago by ▴ 810 • written 17.7 years ago by ★ 1.2k
0
votes
3
replies
1.3k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 17.3 years ago by ▴ 870 • written 17.3 years ago by ▴ 20
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votes
7
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1.6k
views
annotation package for chicken affyprobes
Annotation Organism Gallus gallus probe AnnBuilder Annotation Organism Gallus gallus probe
updated 17.7 years ago by ▴ 180 • written 17.8 years ago by ▴ 870
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votes
8
replies
1.9k
views
raw probe set expression data and masking questions
Normalization Cancer probe affy PROcess Normalization Cancer probe affy PROcess
updated 7.1 years ago by ▴ 40 • written 17.7 years ago by ▴ 20
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votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.9 years ago by ▴ 160 • written 9.9 years ago by 65k
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votes
12
replies
2.1k
views
RMA-bimodality:
Normalization probe Normalization probe
updated 18.0 years ago by ▴ 720 • written 18.0 years ago by ▴ 90
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5
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1.9k
views
biomaRt error in getGene
probe biomaRt probe biomaRt
17.9 years ago Georg Otto ▴ 510
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votes
11
replies
2.1k
views
globaltest question
Pathways probe affy Pathways probe affy
written 17.7 years ago by ▴ 30
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votes
5
replies
2.0k
views
GOstats, geneCounts and gene universe filtering...
GO rat2302 probe GOstats topGO GO rat2302 probe GOstats topGO
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 110
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votes
3
replies
1.3k
views
package xps: export.filter issues
Annotation probe xps Annotation probe xps
updated 11.7 years ago by ★ 3.9k • written 11.8 years ago by ▴ 90
0
votes
4
replies
1.3k
views
Annotation Questions
Microarray GO probe AnnBuilder Microarray GO probe AnnBuilder
updated 20.5 years ago by ★ 2.9k • written 20.5 years ago by ▴ 70
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votes
3
replies
750
views
conditional selection: extracting row from matrix
probe probe
updated 20.4 years ago by ★ 13k • written 20.4 years ago by ▴ 300
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8
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1.4k
views
limma topTable question
probe limma probe limma
updated 19.1 years ago by ▴ 110 • written 19.1 years ago by ▴ 140
0
votes
8
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1.5k
views
Tiling array application
probe affy gcrma probe affy gcrma
19.1 years ago Shinhan Shiu ▴ 60
0
votes
8
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1.7k
views
questions about altcdfenv
GO yeast2 cdf probe GO yeast2 cdf probe
updated 15.6 years ago by ★ 2.0k • written 15.6 years ago by ▴ 160
0
votes
3
replies
1.3k
views
qc.stats error with mgu74av2
mgu74av2 probe simpleaffy mgu74av2 probe simpleaffy
updated 20.3 years ago by ★ 1.1k • written 20.3 years ago by ★ 1.4k
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votes
3
replies
1.4k
views
installing affy environment
mgu74av2 cdf probe affy mgu74av2 cdf probe affy
20.7 years ago Straubhaar, Juerg ▴ 300
0
votes
3
replies
1.1k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 120
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votes
4
replies
1.3k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.9 years ago by ▴ 160 • written 18.9 years ago by ★ 1.1k
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votes
3
replies
809
views
how to separate probe numbers from AffyIDs?
probe probe
updated 20.9 years ago by ▴ 680 • written 20.9 years ago by ★ 2.2k
50 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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