Showing : process • reset
4
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8
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1.8k
views
Designing a model matrix and further process?
limma annotation R process
6.8 years ago Biotechuos4 • 0
3
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3
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1.4k
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EBImage: filtering in the presence of NAs
PROcess EBImage PROcess EBImage
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ▴ 60
2
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6
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9.6k
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GEOquery: how to extract experimental data? (confused)
PROcess GEOquery PROcess GEOquery
updated 12.8 years ago by ▴ 60 • written 12.8 years ago by ★ 1.9k
2
votes
3
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2.1k
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How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ★ 1.0k
2
votes
4
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6.3k
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Too many (?) differentially expressed genes - edgeR and DESeq
PROcess edgeR DESeq PROcess edgeR DESeq
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ▴ 120
2
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9
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GEOquery error
Annotation PROcess Annotation PROcess
updated 8.2 years ago by 6.7k • written 10.1 years ago by 65k
1
vote
1
reply
2.3k
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How to hide or suppress note about ward method in clValid package?
Annotation PROcess Annotation PROcess
updated 9.8 years ago by ★ 1.3k • written 9.8 years ago by ★ 13k
1
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2
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5.9k
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read .mat file in R
process
updated 9.6 years ago by ★ 3.0k • written 9.6 years ago by • 0
1
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3
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1.5k
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RMA on Exon Array NaN values
Normalization PROcess Normalization PROcess
updated 10.3 years ago by ★ 4.3k • written 10.3 years ago by ▴ 40
1
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2
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1.1k
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deleted questions.. as its not very relevant..
process
6.8 years ago • updated 6.7 years ago bioDoctorate • 0
1
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9
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2.8k
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BLAST search sequence for species ID from R?
Biostrings PROcess Biostrings PROcess
updated 14.4 years ago by ▴ 550 • written 14.4 years ago by ▴ 40
1
vote
0
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771
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GSEA with one class metaanalysis
PROcess PROcess
17.2 years ago Gordon Smyth 50k
1
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0
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894
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RmiR, request for new package
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15.2 years ago Nishant Gopalakrishnan ▴ 340
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getSeq human genomic sequences
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15.3 years ago Hervé Pagès 16k
0
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1
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BIRD 2008
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16.6 years ago • updated 16.5 years ago Prof. Roland Wagner ▴ 100
0
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854
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ABPkgBuilder Error; Again
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18.8 years ago Barry Henderson ▴ 250
0
votes
4
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2.1k
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disagreement between biomaRt and topGO
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updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
0
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767
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
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17.3 years ago Henrik Bengtsson ★ 2.4k
0
votes
0
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976
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FW: makecdfenv()
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19.9 years ago Lana Schaffer ▴ 80
0
votes
0
replies
757
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Re: [R] Source package installation for WinXPpro
Microarray Cancer affy PROcess Microarray Cancer affy PROcess
20.6 years ago James W. MacDonald 65k
0
votes
2
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1.2k
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
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updated 12.3 years ago by 65k • written 12.3 years ago by ▴ 630
0
votes
1
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1.5k
views
Summarising Probe Sets for Agilent 4x44 Arrays
Clustering probe PROcess Clustering probe PROcess
updated 12.5 years ago by ▴ 80 • written 12.5 years ago by ▴ 10
0
votes
4
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1.4k
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use of duplicateCorrelation in Limma with agilent one-color arrays
limma PROcess limma PROcess
updated 12.3 years ago by 50k • written 12.3 years ago by ▴ 150
0
votes
1
reply
1.3k
views
flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess flowWorkspace PROcess flowWorkspace
updated 12.1 years ago by ▴ 30 • written 12.1 years ago by ▴ 240
0
votes
5
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2.4k
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EasyRNASeq issue (missing bai files)
GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq
updated 11.8 years ago by ▴ 10 • written 11.8 years ago by ★ 1.2k
0
votes
5
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1.3k
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Visualizing the region of classification uncertainty on thresholded images
PROcess PROcess
updated 11.8 years ago by ▴ 650 • written 11.8 years ago by ★ 13k
0
votes
0
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
11.7 years ago Seyed Ahmad Mousavi ▴ 10
0
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Classification in Mass Spectrometry Data
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11.5 years ago McGee, Monnie ▴ 300
0
votes
3
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Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 11.5 years ago by 21k • written 11.5 years ago by ▴ 300
0
votes
7
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3.6k
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Weird things happening with minfi and RcppEigen
PROcess minfi PROcess minfi
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 440
0
votes
0
replies
949
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FDA soliciting proposals to analyze gene expression datasets
Microarray Pharmacogenomics PROcess Microarray Pharmacogenomics PROcess
18.1 years ago Wolfgang Huber ★ 13k
0
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0
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cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
12.6 years ago viritha kaza ▴ 580
0
votes
0
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FW: normalization one color microarrays
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12.7 years ago Paz Tapia Ramirez ▴ 150
0
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Issues with BioC GO annotations and NetAffx
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updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 110
0
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4
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win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 19.9 years ago by ▴ 360 • written 19.9 years ago by ▴ 940
0
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R hthgu133afrmavecs_1.1.0 error: row.effects should sum to zero
GO probe PROcess frma GO probe PROcess frma
9.9 years ago Matthew McCall ▴ 830
0
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preparing sequencing data for use with anota
Sequencing Normalization PROcess anota Sequencing Normalization PROcess anota
updated 8.8 years ago by • 0 • written 10.2 years ago by ★ 13k
0
votes
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Question about 'updateCel' from package 'affxparser'
cdf PROcess affxparser cdf PROcess affxparser
12.7 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
979
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Affymetrix exon arrays?
Normalization Cancer Breast cdf affy PROcess Normalization Cancer Breast cdf affy
updated 17.6 years ago by ▴ 20 • written 17.6 years ago by ▴ 310
0
votes
4
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peer review process for bioconductor packages
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22.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
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(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
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22.1 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
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affy expression values
Proteomics affy PROcess Proteomics affy PROcess
updated 21.8 years ago by ▴ 640 • written 21.8 years ago by ▴ 10
0
votes
1
reply
1.0k
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Annotation for Nonspecificity of Affymetrix Probes?
probe PROcess probe PROcess
updated 21.8 years ago by ★ 5.5k • written 21.8 years ago by ▴ 70
0
votes
1
reply
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Problem whit Affy
GO cdf probe PROcess GO cdf probe PROcess
updated 21.7 years ago by ▴ 640 • written 21.7 years ago by ▴ 10
0
votes
6
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request for letter of support
PROcess PROcess
updated 21.5 years ago by ▴ 220 • written 21.5 years ago by ★ 5.5k
0
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1
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Job Posting in Biostatistics/Statistics
Bayesian Survival Cancer PROcess ASSET Bayesian Survival Cancer PROcess ASSET
updated 21.5 years ago by ▴ 80 • written 21.5 years ago by ▴ 10
0
votes
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protien and peptide mass spectrometry
genefilter PROcess genefilter PROcess
21.4 years ago Nicholas Lewin-Koh ▴ 430
0
votes
0
replies
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Widget option enabled:Thank you
PROcess PROcess
21.3 years ago Tapan Mehta ▴ 270
0
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0
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InfoVis 2003 Call for Papers
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21.3 years ago rgentleman ★ 5.5k
0
votes
3
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Getting GO ids for genenames in plasmodium falciparum
GO Plasmodium falciparum PROcess convert GO Plasmodium falciparum PROcess convert
updated 10.6 years ago by 25k • written 10.6 years ago by ★ 13k
50 results • Page 1 of 1
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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