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rle
•
reset
1
vote
1
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998
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 13 months ago by
ATpoint
★ 4.1k • written 13 months ago by
SH
• 0
0
votes
1
reply
846
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
lklei001
• 0
0
votes
1
reply
1.7k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 4.2 years ago by
Michael Love
42k • written 4.2 years ago by
f_pardow
• 0
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
972
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.9 years ago
endrebak85
▴ 40
1
vote
1
reply
3.0k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 5.9 years ago by
Michael Love
42k • written 6.0 years ago by
Aurora
▴ 20
1
vote
1
reply
1.1k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
6.1 years ago • updated 6.0 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.6k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.5 years ago by
Peter Hickey
▴ 740 • written 6.5 years ago by
davide risso
▴ 950
2
votes
4
replies
1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 10 months ago by
Hervé Pagès
16k • written 6.9 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.6k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.6 years ago
my4
▴ 10
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
2.4k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.9 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.4k
views
extract RLE normalized table
rle
normalization
table
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
aiko
• 0
3
votes
7
replies
2.0k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
gen
▴ 30
2
votes
6
replies
2.8k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
gen
▴ 30
2
votes
4
replies
1.9k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.1 years ago by
Chris Seidel
▴ 80 • written 9.1 years ago by
gen
▴ 30
1
vote
2
replies
1.1k
views
Summary statistics of RleListViews object
rle
Views
9.2 years ago
Sean Davis
21k
2
votes
5
replies
1.5k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
9.2 years ago
Janet Young
▴ 740
1
vote
1
reply
2.3k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 9.3 years ago by
Sean Davis
21k • written 9.3 years ago by
beverly893
▴ 10
0
votes
2
replies
1.2k
views
boxplot on an Rle object?
Rle
boxplot
9.3 years ago
Johannes Rainer
★ 2.0k
20 results • Page
1 of 1
Recent ...
Replies
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…
Votes
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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